| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lferr_1188 |
|---|
| Symbol | |
|---|
| ID | 6877161 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011206 |
|---|
| Strand | - |
|---|
| Start bp | 1160849 |
|---|
| End bp | 1161532 |
|---|
| Gene Length | 684 bp |
|---|
| Protein Length | 227 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 642789065 |
|---|
| Product | fumarylacetoacetate (FAA) hydrolase |
|---|
| Protein accession | YP_002219633 |
|---|
| Protein GI | 198283312 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0179] 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.378742 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACTACG CCTTCCCGCC CGCCCCTGTC GTGACTCTGG ACGCCATGTC CAGCAACCCT
TTCCCGGTGC GACGCATTTT TTGCGTCGGG CAGAACTATG CTGATCACGC CCGGGAAATG
GGCAGCGCGC CCGATACCGA ACCCTTCTTT TTCATGAAAC CCGCCAGCGC CATCCTGCGG
AATAATTCAG TGCTGCCCTA TCCGCCGGGC ACTACCGACC TGCAGCCCGA GGTGGAACTG
GTGGTGGCGC TACACAAGGG CGGCAAACAT ATTCCCACGG GTAAGGTCGA TGATGACTAC
GTGTTCGGCT ACGCCGTGGG GCTGGACATG ACCCGCCGCG ACCTGCAACG CGCGGCCCGC
GAAAAGGGCC AGCCCTGGGA GATGGCCAAA GCATTCGACC ATTCGGCACC CTGCACGGCC
ATCACGCCCG AGTTTTATTC GGGAACCATC GCCCGCGGCA AGGTCGAACT CAAGGTGAAT
GGTCAAATCC GCCAGAGCGC CGATGTCGGC GACATGCTCT GGAAGATTCC GCAGATCGTC
CATTTCCTGT CCAATCAAGT CGAACTCTTT CCCGGCGATC TCCTCTTCAC CGGCACCCCC
GCCGGCGTGG GCCCGGTGGT GAAAGGCGAC GTGATCGAGG CCACTGTGGC CGGGCTGGAA
CCGCTGATCA TCACCATCGG CTAA
|
|---|
| Protein sequence | MNYAFPPAPV VTLDAMSSNP FPVRRIFCVG QNYADHAREM GSAPDTEPFF FMKPASAILR
NNSVLPYPPG TTDLQPEVEL VVALHKGGKH IPTGKVDDDY VFGYAVGLDM TRRDLQRAAR
EKGQPWEMAK AFDHSAPCTA ITPEFYSGTI ARGKVELKVN GQIRQSADVG DMLWKIPQIV
HFLSNQVELF PGDLLFTGTP AGVGPVVKGD VIEATVAGLE PLIITIG
|
|---|
| |