| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lferr_1059 |
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| Symbol | |
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| ID | 6877030 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011206 |
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| Strand | - |
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| Start bp | 1029262 |
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| End bp | 1031238 |
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| Gene Length | 1977 bp |
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| Protein Length | 658 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 642788939 |
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| Product | Lytic transglycosylase catalytic |
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| Protein accession | YP_002219508 |
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| Protein GI | 198283187 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.210137 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCGCCT TTAAGGCAAT CTTGAGAGTA CGCTCCTCCC GTCCCGCGGC GGTGCTGGTG
TCGCTGGTGC TGTGGATGGG TTGTGGAACA TCCGTAGCGA CGGCCGGCAT CCTCAGTGCC
GCTCAGGAAC AACTTTTGAA CTCGGCAGCA ACCGCTTTCG CTCAGGGTGA TTATCGCCCC
GCCGCCGATG CACTGCCTGA ATTGGAAAAC ACCTACATGG GACCATGGGT AGGGTACTGG
TCTCTGCAAC CCCGCCTCAA CATCATGACC CAGCGCCAAT ACCAGCGCTA TACCCTGCAC
TATCCGGGCG GAGTGGCGCA TCATCTGCTG CGCCGGCAAT GGCTGCTGGA ACTCGCGCGC
CGCAAGGACT GGCCGGACTT CACCCAAGTG TATCAGGATG GCAGCCCTCC TGATTTGATC
TCCTTACGCT GCGATGCGGC GCGCGACCCA CTGCTGCGCA CCAGTCTGGT AGTTGCCCCC
TTTTTCCTCT GGAGCAGTGC TCCGGCGAAC GATCAGGCCT GCAACGCCAT GGCGCGCGTC
TATCTGGCAC AGGGGCAAAT CAAGACGTCC GAGCTGTGGC ATCGCCTGCA GCAAATGTAC
GAGGCCTCGG CCTTCAGCGC CGCGCTGCGC TTTGCCCCGT TTTTGCCTCC GCCGCAATCC
GGCCAGCTTG CGCAGACGGT AACGGCACCG GCCACATGGA TCTCTCAGCA GATTCAGCAA
TACGGCACCG GCAACTGGCC AGCCGGTCAG GCCCATTTGC TGGTGCTCGC CCTCCTGCGC
CTCGCTGCCA TCCATCCTGC AGACGCCGCA CGATTTGTGC AAACCCTGGA TGCCCTGGAT
GCTGCCGATA AATCTCTGCT GCTGTACAAC GCTGCCTACC ATGCCACGCT ATCCTTTTGT
TCCGAATCCG GACACTGGTA TGCCCAGGCC TACGCGGCCG ATCCGCAGTT CCACCCACGG
CCCCGACTGC TGGCCTGGAT GGTCCGTACA GCATTGCGCG ACGGTGACTG GAACATGGTG
GAGCTGGCCA CCCGGCAGAT GGGTGCCGTT CAACGGCAGC AGCGGCAATG GCAATTCTGG
TCCGCGATCG CACAACTCCA GCTTGGGCAG ACGCAGGCCG CCTATACCGC GCTCGCGGCT
CTGGAATCTC CGTGGACTTA TTACGGGCAA CTGGCCATGG CGACGCTGAA CAGACCACTG
ATCCTGAAGT CCGGCGACCC GCCCGCACCC ATCGAAGTGA GTGCCACTCC CGTGAATAAT
GCTCCCGGGC GGACCGCGAT CACACTTTAT CATCTCGGAC TCTATTTCGA CGCCCTTGCC
GAATGGGACC AGTTTTTGAA GGGGTTGAAC GGCCCAGCGG AAATCGAGGC CGCAGCCCGG
ACGGCCTTTC AGCATGAGGC GTGGCTGCTG GGCATCCATG CCAGCAGCCT GATTCGCGGT
GGGAAAGACT GGCGACAAGG CTACGTGCTT CCCTATGCGC AGGAAATCAG TGCCGCCGCA
GCCCAAACCG GCTTGCGACG CGCCTTTCTT GCCGGCCTGA TCCGGCAGGA ATCTGGTTTT
GCGTTCGGCA TCCAGTCCGA CGTCGGCGCG CAAGGCCTGA TGCAGGTGAT GCCCGCCACC
GCCCGGTGGC TGCAAACCCA TGTCGCCGGC GCCGCCACCG CCGATCTGCA CAGCGTCGAC
GGCAACCTGA CCCTGGGTTC GCACTATCTG AGTCTTCAGC AACAGCATTT TGGTGGCTCC
GAGCTGCTGG CTGCGGCGGC CTACAACGCC GGGCCCGGCG CACCGCAACG CTGGCTGGGT
CGTTGGACAC CGCCGCCAGG CCCATGGGCG GGTCCGATTT TCACCGCGAA TATCCCCTTT
CGGCAAACCC GCCACTATGT GCAGAGCGTG CTGACCAACA CGGTTGTCTA CGCCGCCATT
CTCGACCGCA AGCCGCAAAC CATATGGCCC GAGTGGCGCC TCGGCACCAA CCCGTAA
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| Protein sequence | MAAFKAILRV RSSRPAAVLV SLVLWMGCGT SVATAGILSA AQEQLLNSAA TAFAQGDYRP
AADALPELEN TYMGPWVGYW SLQPRLNIMT QRQYQRYTLH YPGGVAHHLL RRQWLLELAR
RKDWPDFTQV YQDGSPPDLI SLRCDAARDP LLRTSLVVAP FFLWSSAPAN DQACNAMARV
YLAQGQIKTS ELWHRLQQMY EASAFSAALR FAPFLPPPQS GQLAQTVTAP ATWISQQIQQ
YGTGNWPAGQ AHLLVLALLR LAAIHPADAA RFVQTLDALD AADKSLLLYN AAYHATLSFC
SESGHWYAQA YAADPQFHPR PRLLAWMVRT ALRDGDWNMV ELATRQMGAV QRQQRQWQFW
SAIAQLQLGQ TQAAYTALAA LESPWTYYGQ LAMATLNRPL ILKSGDPPAP IEVSATPVNN
APGRTAITLY HLGLYFDALA EWDQFLKGLN GPAEIEAAAR TAFQHEAWLL GIHASSLIRG
GKDWRQGYVL PYAQEISAAA AQTGLRRAFL AGLIRQESGF AFGIQSDVGA QGLMQVMPAT
ARWLQTHVAG AATADLHSVD GNLTLGSHYL SLQQQHFGGS ELLAAAAYNA GPGAPQRWLG
RWTPPPGPWA GPIFTANIPF RQTRHYVQSV LTNTVVYAAI LDRKPQTIWP EWRLGTNP
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