Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lferr_0988 |
Symbol | |
ID | 6876956 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
Kingdom | Bacteria |
Replicon accession | NC_011206 |
Strand | - |
Start bp | 962563 |
End bp | 964056 |
Gene Length | 1494 bp |
Protein Length | 497 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 642788869 |
Product | drug resistance transporter, EmrB/QacA subfamily |
Protein accession | YP_002219441 |
Protein GI | 198283120 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.0000263412 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGGTGATAC TCCTCAACCT GGCGATCGGG CTGGGTCACC TCCTCGTACT CTTCAACACC GGGGCCTATC TGCCCATGAT CCCCCGTGTT GCCGGGAGTC TGGGCGTCAA TCCCGCTTAT GCAGACTGGA CCCAGGCGAA TTTTTTCCTG GCCATGGCAC TGGCCTTTCC CACCGCGACG TGGTTTCTGA ACCGCTGGGG GGAGATGCGT AGCCTGCTCG GCGCCTTCCT CGCCTTTGCC CTGGCTTCCG CCGTATGCGC CCAGACCAGC AATTACGACT GGTTTTTGGC CGCGCGCATC GTCCAGGGTT ATGCGGGCGG ATTGACCATT CCCATCTCAC TTGGTGTCAT CCTGCGCCAC TACACGCCAC AACGGCGCAA TATTGGCCTC ACTCTCTGGG GCGTCGCGGC CATCACACCG TTCACCTTGG GGCCGACCAT CGGGGGCTGG ATCACCGACG CCCTGGGTTG GCGTTGGCTG TTTTACCTCA ACATGCCCAT TGCCGTCGCG GTCGCCTTGA TCAGTGCGAT TCTTCTGGTC GGGCGTGAAG CGGACCATCG CCATCCGCCA TTAGACTGGC CGGGGCTGAT TTTCCTGCTG ATCGCCTTGG CAGCGCTGGA GTCTGCACTC AATTCCGGCG AAATCATCAG TTGGTGGCGT TCCAATACCA TCATTTTTCT GACGACTATC GGCGCTGCCG CGCTTGTTTT CTTCGCGCTC TGGGAATGGC ACAGCGCCCA CCCCTTGCTG GAACTGCGCT TTCTGCGGCG CCGTAATTTC CTGATCGGCG CAATCGGCCT ATTTATTACT GCCCTCTTTT TTCAGGGCAC TATGGCGCTC TATATTGTTG GATTTCAGTT GACCATGGGC TATTCCGCAT GGATGGTCGG CCTTTTATTA TTGCCCATGG CTATCTTCTC AAAACTTAGT GCCACGCTCA CCCAGCGTTT TTTGAATCAC ATTGATGCGC GCATACTCGG GATGATTTCC CTGCTGGGAT TTTCGGCAGG CAGTTTCTGG GTTTCTTCCT ACAATCGGAC AGCTTCTTTT GATGAATTGC TCTGGCCGCA GATACTTGTG GGCATGTTTC TGGGCGGTCT ATTCCCGGCG TTGATCGCCA TCGCGCTTTC CGGATTGCGT GGAGCCGCCG AAATGCGTGG CACTGCCTTC TTAAATCTGC TGCGGGTGTC TGGACAGGCC ATGGGCATTC CGATAATAGC CACTCTATTC GACAGAAGGA TGATTCTTCA CGCGCATTTT CTCGCCGAAA ACGGCGGAAC GATAACATCC ATGCTCAACA CCTCCGTGAA AAATGCGAGA ACATCCGACT ACATAACACA CCATGCTGCA ATGCTCGCTT TCAATGAAAT ATTTTACATC GCCGCATGGG GATTTCTGAT CGTGGCCGGT CTATTATTGT TGGCCAAACG GGTGGTTTTC GCCGAACCGG ATGTCCGGGT GCGCCAGGCG CTGGAAGAAC TGGTGGAACC CTGA
|
Protein sequence | MVILLNLAIG LGHLLVLFNT GAYLPMIPRV AGSLGVNPAY ADWTQANFFL AMALAFPTAT WFLNRWGEMR SLLGAFLAFA LASAVCAQTS NYDWFLAARI VQGYAGGLTI PISLGVILRH YTPQRRNIGL TLWGVAAITP FTLGPTIGGW ITDALGWRWL FYLNMPIAVA VALISAILLV GREADHRHPP LDWPGLIFLL IALAALESAL NSGEIISWWR SNTIIFLTTI GAAALVFFAL WEWHSAHPLL ELRFLRRRNF LIGAIGLFIT ALFFQGTMAL YIVGFQLTMG YSAWMVGLLL LPMAIFSKLS ATLTQRFLNH IDARILGMIS LLGFSAGSFW VSSYNRTASF DELLWPQILV GMFLGGLFPA LIAIALSGLR GAAEMRGTAF LNLLRVSGQA MGIPIIATLF DRRMILHAHF LAENGGTITS MLNTSVKNAR TSDYITHHAA MLAFNEIFYI AAWGFLIVAG LLLLAKRVVF AEPDVRVRQA LEELVEP
|
| |