Gene Lferr_0988 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLferr_0988 
Symbol 
ID6876956 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidithiobacillus ferrooxidans ATCC 53993 
KingdomBacteria 
Replicon accessionNC_011206 
Strand
Start bp962563 
End bp964056 
Gene Length1494 bp 
Protein Length497 aa 
Translation table11 
GC content56% 
IMG OID642788869 
Productdrug resistance transporter, EmrB/QacA subfamily 
Protein accessionYP_002219441 
Protein GI198283120 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID[TIGR00711] drug resistance transporter, EmrB/QacA subfamily 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000263412 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGTGATAC TCCTCAACCT GGCGATCGGG CTGGGTCACC TCCTCGTACT CTTCAACACC 
GGGGCCTATC TGCCCATGAT CCCCCGTGTT GCCGGGAGTC TGGGCGTCAA TCCCGCTTAT
GCAGACTGGA CCCAGGCGAA TTTTTTCCTG GCCATGGCAC TGGCCTTTCC CACCGCGACG
TGGTTTCTGA ACCGCTGGGG GGAGATGCGT AGCCTGCTCG GCGCCTTCCT CGCCTTTGCC
CTGGCTTCCG CCGTATGCGC CCAGACCAGC AATTACGACT GGTTTTTGGC CGCGCGCATC
GTCCAGGGTT ATGCGGGCGG ATTGACCATT CCCATCTCAC TTGGTGTCAT CCTGCGCCAC
TACACGCCAC AACGGCGCAA TATTGGCCTC ACTCTCTGGG GCGTCGCGGC CATCACACCG
TTCACCTTGG GGCCGACCAT CGGGGGCTGG ATCACCGACG CCCTGGGTTG GCGTTGGCTG
TTTTACCTCA ACATGCCCAT TGCCGTCGCG GTCGCCTTGA TCAGTGCGAT TCTTCTGGTC
GGGCGTGAAG CGGACCATCG CCATCCGCCA TTAGACTGGC CGGGGCTGAT TTTCCTGCTG
ATCGCCTTGG CAGCGCTGGA GTCTGCACTC AATTCCGGCG AAATCATCAG TTGGTGGCGT
TCCAATACCA TCATTTTTCT GACGACTATC GGCGCTGCCG CGCTTGTTTT CTTCGCGCTC
TGGGAATGGC ACAGCGCCCA CCCCTTGCTG GAACTGCGCT TTCTGCGGCG CCGTAATTTC
CTGATCGGCG CAATCGGCCT ATTTATTACT GCCCTCTTTT TTCAGGGCAC TATGGCGCTC
TATATTGTTG GATTTCAGTT GACCATGGGC TATTCCGCAT GGATGGTCGG CCTTTTATTA
TTGCCCATGG CTATCTTCTC AAAACTTAGT GCCACGCTCA CCCAGCGTTT TTTGAATCAC
ATTGATGCGC GCATACTCGG GATGATTTCC CTGCTGGGAT TTTCGGCAGG CAGTTTCTGG
GTTTCTTCCT ACAATCGGAC AGCTTCTTTT GATGAATTGC TCTGGCCGCA GATACTTGTG
GGCATGTTTC TGGGCGGTCT ATTCCCGGCG TTGATCGCCA TCGCGCTTTC CGGATTGCGT
GGAGCCGCCG AAATGCGTGG CACTGCCTTC TTAAATCTGC TGCGGGTGTC TGGACAGGCC
ATGGGCATTC CGATAATAGC CACTCTATTC GACAGAAGGA TGATTCTTCA CGCGCATTTT
CTCGCCGAAA ACGGCGGAAC GATAACATCC ATGCTCAACA CCTCCGTGAA AAATGCGAGA
ACATCCGACT ACATAACACA CCATGCTGCA ATGCTCGCTT TCAATGAAAT ATTTTACATC
GCCGCATGGG GATTTCTGAT CGTGGCCGGT CTATTATTGT TGGCCAAACG GGTGGTTTTC
GCCGAACCGG ATGTCCGGGT GCGCCAGGCG CTGGAAGAAC TGGTGGAACC CTGA
 
Protein sequence
MVILLNLAIG LGHLLVLFNT GAYLPMIPRV AGSLGVNPAY ADWTQANFFL AMALAFPTAT 
WFLNRWGEMR SLLGAFLAFA LASAVCAQTS NYDWFLAARI VQGYAGGLTI PISLGVILRH
YTPQRRNIGL TLWGVAAITP FTLGPTIGGW ITDALGWRWL FYLNMPIAVA VALISAILLV
GREADHRHPP LDWPGLIFLL IALAALESAL NSGEIISWWR SNTIIFLTTI GAAALVFFAL
WEWHSAHPLL ELRFLRRRNF LIGAIGLFIT ALFFQGTMAL YIVGFQLTMG YSAWMVGLLL
LPMAIFSKLS ATLTQRFLNH IDARILGMIS LLGFSAGSFW VSSYNRTASF DELLWPQILV
GMFLGGLFPA LIAIALSGLR GAAEMRGTAF LNLLRVSGQA MGIPIIATLF DRRMILHAHF
LAENGGTITS MLNTSVKNAR TSDYITHHAA MLAFNEIFYI AAWGFLIVAG LLLLAKRVVF
AEPDVRVRQA LEELVEP