| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lferr_0987 |
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| Symbol | |
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| ID | 6876955 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011206 |
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| Strand | - |
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| Start bp | 961130 |
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| End bp | 962563 |
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| Gene Length | 1434 bp |
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| Protein Length | 477 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 642788868 |
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| Product | RND efflux system, outer membrane lipoprotein, NodT family |
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| Protein accession | YP_002219440 |
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| Protein GI | 198283119 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.00030161 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAACGCC GCATCGCCCT TATCCTACCG TTGTTGTTGC TCGGCGCCTG CGCACGCCTA
CCGCCGCACC TCCCCGGCGG CAAAATGGCG CAGAATACGC AAATCAGCGG AACACTGGCA
TACGTTGACG GCCATAATGG TGTGCTTACG GGTACCTGGC CCGTGTCAAA CTGGTGGACT
TCGGCACAGC TACCGGCCCT GAACACGTTG ATCACCGAAG CGCTGCGCGA CAATCCTTCG
CTGCAGGTCG CCAGTGCGCG CATTCTGCAA GCCAAAGCGG CTGCGACAGA CCAGCATGCC
GCCCTTCTCC CGCATTTTTC CGCAGCTGCG TCGGTGACTC AGGAGTACTT TTCCCGGCAA
GGCTTGCACG CCCCGTTGAA TGGCAAAACC ATCACCTATG GTGCTCTCAA TCCTCTGGAA
ATGCGCTATC ACCTGGATTT GTGGGGACGG GACAGCGACC GCGTACGCGC CGCCCTGGGG
GAAGTACGCG TACACCAGGC GGATTACGCC GAGGCAAAAT TATTGCTTTC CACCCAGTTG
GCGTGGCACT ACCTTTTGCT GGCGGGTGAT GTACAACGCC TCCGGCAATT GGTTCGCGCG
GAAGCTCTGC ACACCTCCTT ACTCCACCTG GAACAACAGC GCTGGCATGA CGGCCTGAGC
GATGCCCGCG CTGTTTATCT GCAGGAAGAG GCGCGCGCAG GGGCACGCCA GTCGGTTGCC
GACATGCAGG CAGCCATCGC TCAACAGCGC TATATATTGG CGGCACTGGT CGGACACGGA
CCCGATTGGG GGCGGGATAT TCCGGCAGAG CCGTTGCCCA CGCTATCCAC GATCACCATG
CCCAGGAATT TGCCCCTACG TCTCATTGCG CACCGTCCGG ATATAGTCGC TGCGCGCTGG
GAAACAGAAG TCGCGGCGCA ACAGGTGGGT GCGGCACGCG CAGCCTTTTA TCCCGATGTG
AATATCGCCC TGTTTGCGGG ATGGAACAGT ATTCATCTGG GAGATCTGTT CAGTCCCGGC
AATCTCGCAC ATGCCCTTGG CCCAGTCATA TCTCTGCCGA TTTTCGAAGG AGGGAGATTA
CGCGCCCAAC TGAAAGAGAA AAATGCATCA TACATAGCCA CGGAAGACCA TTATCGCGCC
ACCATCCTCG GCGCGGTGCG CGAGATTGCC GGTCGGCTGG CCACCTGGCG ACAGATACGC
CAAAAACTTC GGGCACAACG GCAGATGATT TACGCCGCCG AGCATACCAC GGCGCTGGCT
GAATCTGCCT TTCATTCCGG CATTACGGAT AAAGCAGAAG CCTATGGCGC GCAGATTCAG
GAGACGGAAA TAAGAAATCA ACTGCTGGCC TTAAAGATGC AAAATGCGCA ATCCTGGGTA
TTGCTGCATT CAGCGCTGGG TGGCGGATAT ACCTCGCGGA AGAATCCCGC ATGA
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| Protein sequence | MKRRIALILP LLLLGACARL PPHLPGGKMA QNTQISGTLA YVDGHNGVLT GTWPVSNWWT
SAQLPALNTL ITEALRDNPS LQVASARILQ AKAAATDQHA ALLPHFSAAA SVTQEYFSRQ
GLHAPLNGKT ITYGALNPLE MRYHLDLWGR DSDRVRAALG EVRVHQADYA EAKLLLSTQL
AWHYLLLAGD VQRLRQLVRA EALHTSLLHL EQQRWHDGLS DARAVYLQEE ARAGARQSVA
DMQAAIAQQR YILAALVGHG PDWGRDIPAE PLPTLSTITM PRNLPLRLIA HRPDIVAARW
ETEVAAQQVG AARAAFYPDV NIALFAGWNS IHLGDLFSPG NLAHALGPVI SLPIFEGGRL
RAQLKEKNAS YIATEDHYRA TILGAVREIA GRLATWRQIR QKLRAQRQMI YAAEHTTALA
ESAFHSGITD KAEAYGAQIQ ETEIRNQLLA LKMQNAQSWV LLHSALGGGY TSRKNPA
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