| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lferr_0903 |
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| Symbol | |
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| ID | 6876868 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011206 |
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| Strand | + |
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| Start bp | 864796 |
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| End bp | 866811 |
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| Gene Length | 2016 bp |
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| Protein Length | 671 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 642788784 |
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| Product | DNA ligase, NAD-dependent |
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| Protein accession | YP_002219359 |
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| Protein GI | 198283038 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.226398 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGAGCGGG TCAACCATAC TGACTTCGAG CGTATTCAGC AATTGCGTGC GGAACTGGTG
GCGGCCAATA ACGCCTACTA TCGGGAAGAT TCGCCGACCC TGAGTGATGC CGAGTACGAT
GCGCGCCTGC GCGAACTGCG CACCCTGGAG GACCGTAATC CCCAATGGCA AAGCGCCGAC
TCTCCGACCC AGAGGGTCGG GGCGGCTCCG GTGGAGGTCT TTGGGGAAGT GCATTATGCC
ATACCCCTGA CCTCTCTCGA CAATGTGTTC GATCAAGACG GTTTTAGCGA CTGGCTGGCG
CGCGTGCAGA AGGGGCTCGG CCGCGAGGAT GTTCCGCTCA GTGCTGAACC CAAGTTTGAC
GGTCTCTCGG TCAACATTCG CTACATCGAG GGTAAGCTGG TACAGGCTGG TACCCGTGGA
GATGGCCAGA CCGGTGAAGA TGTCACCGCC AACGTCCGCA CCATTCGCAA CGTCCCCCTG
CAACTGACAG GCAAGGACTG GCCGGAGCTG CTGGAAGTCC GTGGAGAGGT GGTCATCCCC
GTGGCCGCTT TCCGGCGTCT GAATGGCGAG CGTCTGCGCG CCGGGGATAA CCCCTTTGCC
AACCCCCGCA ATGCGGCGGC AGGCAGTCTG CGACAACTGG ATTCCAGCGT AACGGCAAAG
CGCCCCCTCG CGTACTTCCC CTGGGGATGG GGAGAAAGCA GCGTGCCACT GGGGAAAAGC
CACATCGCGG TTATGGAACG CCTTTCTGCC TGGGGCTTCG AGGTGACCTC CTATCTGCGC
GGTGTTCACG AACTCACGGA ATGCCAACGC TATTTCAGCG AGATGCAGAA AATACGCGAA
GGCATGCCTT TTGAAATAGA CGGCCTCGTG TTCAAAGTTG ACGATCTGCT CGCCAGGGAA
CAGTTGGGCT TCACCGCCCG CGCACCGCGT TGGGCCATTG CCTATAAATT TCCGGCGCAC
GAAGAGCGTA CCGTGGTCGA AGATATCCTG GCTTCCGTAG GGCGCACCGG TGTGATTACT
CCTGTGGCTG TCTTGAAGCC CGTGCAGGTG GGCGGCGTAA CCGTGAGCCG CGCCAGCTTG
CATAATCAGG ATGAAGTGGA TCGTAAGGAT ATTCGCGTGG GCGACACGGT GCTGGTACGC
CGCGCCGGCG ACGTGATCCC GGAAGTGGTC ATGGTGATCA AAGAGGAGCG GCCGCCTGCG
ACACAACCCT GGCACATGCC GCAGCGTTGT CCGGTCTGCG GCTCGGAGGT CTTGCGCCTG
GCCAACGAGT CGGCGCATCG TTGCATGGGC GGGCTGTACT GCCCGGCACA GCGGATGGGC
GCCATTCGGC ACTTTGCGTC GCGTCGGGCC ATGGACATCC GGGGGCTGGG CGAAAAGCTC
GTTGAGCAAC TGGTCGGGCA TGGTCTGGTG CACACCGTGG CCGATATCTA CCATCTGGAT
GAAGCGGCTC TGTGCGGCTT GGAGCGCATG GCCAGCCGTT CGGCGCAAAA GCTCCTCGCC
GAAATCGATC GCTCCCGCCA TACCTCCTTG CCCCGTTTTC TCTACGCCCT GGGTATCCGT
CAGGTTGGGG AGGGTACGGC CAAATCCCTG GCCATCTATT TCGGGGATCT GGACCCCCTG
ATGGCCGCAA CACCGGAGCT TTTGCAGAAC ATTCCCGATG TAGGGCCTAT CGTGGCGGAA
TCCGTTGCCC ATTTTTTTGC CCAGCCCCAT AACCGCGACG TCATTGCCGC CCTGCGCGCG
GCAGGAGTAC AGTGGGCTGT GGTCCAGCCG CAAAAAGGCG GGCGTTTTCA GGGTATGACC
CTGGTGCTCA CCGGAGCCTT GGACAACATG ACCCGGGAAG AGGCCAAAAC CGCCATAGAA
AACGCGGGCG GGAAAGTCAG CGGTTCCGTG TCGGCCAAAA CAAGCTATGT GGTAGTCGGC
AAGGATCCCG GCAGTAAGGC CGAAAAGGCC GCAAAGCTGG GTGTGAAACA GCTTACCGAG
GCGCAATTTT TGGCGATGTT TTCAGAAAAG GAATGA
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| Protein sequence | MERVNHTDFE RIQQLRAELV AANNAYYRED SPTLSDAEYD ARLRELRTLE DRNPQWQSAD
SPTQRVGAAP VEVFGEVHYA IPLTSLDNVF DQDGFSDWLA RVQKGLGRED VPLSAEPKFD
GLSVNIRYIE GKLVQAGTRG DGQTGEDVTA NVRTIRNVPL QLTGKDWPEL LEVRGEVVIP
VAAFRRLNGE RLRAGDNPFA NPRNAAAGSL RQLDSSVTAK RPLAYFPWGW GESSVPLGKS
HIAVMERLSA WGFEVTSYLR GVHELTECQR YFSEMQKIRE GMPFEIDGLV FKVDDLLARE
QLGFTARAPR WAIAYKFPAH EERTVVEDIL ASVGRTGVIT PVAVLKPVQV GGVTVSRASL
HNQDEVDRKD IRVGDTVLVR RAGDVIPEVV MVIKEERPPA TQPWHMPQRC PVCGSEVLRL
ANESAHRCMG GLYCPAQRMG AIRHFASRRA MDIRGLGEKL VEQLVGHGLV HTVADIYHLD
EAALCGLERM ASRSAQKLLA EIDRSRHTSL PRFLYALGIR QVGEGTAKSL AIYFGDLDPL
MAATPELLQN IPDVGPIVAE SVAHFFAQPH NRDVIAALRA AGVQWAVVQP QKGGRFQGMT
LVLTGALDNM TREEAKTAIE NAGGKVSGSV SAKTSYVVVG KDPGSKAEKA AKLGVKQLTE
AQFLAMFSEK E
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