Gene Lferr_0884 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLferr_0884 
Symbol 
ID6876849 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidithiobacillus ferrooxidans ATCC 53993 
KingdomBacteria 
Replicon accessionNC_011206 
Strand
Start bp845259 
End bp845807 
Gene Length549 bp 
Protein Length182 aa 
Translation table11 
GC content59% 
IMG OID642788766 
ProductPilus assembly protein PilP 
Protein accessionYP_002219341 
Protein GI198283020 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3168] Tfp pilus assembly protein PilP 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones47 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGCGTT CTTTCCGTAT CATGATGGTG CTTACCGGCA TGGCGTTGCT GGGCGGCTGC 
TCGGAGAGCG ACAACCTCAG TCATCTTCAG GCTTTTGTAG CCAACGGACC GAAAATCAGC
GCGCACGTCA CGCCGCTGCC CAAGACCCCC GCTTACCAGC CGAAGGCTTA TGAAAATCCA
ACGAATCGCG ACCCCTTCAC GAGCTTTTCG GAACTGCTAC TTCGCAAGGA GGCCGCCGCC
GCCAGCACGG GTCCACGTCC CGCCAGTCAT GGACCACTCC AACCCCTGGA GAAGTACGCG
CTTTCCAGCC TGAGCGTGAC CGGCATCGTC CGCGACAGCC AGGGCAAGCT CTGGGCCGTG
CTCCTCACAC CGGATCATAA GGTGTATCGC GCCACGGTCG GCAGTTACAT CGGCACCCAT
GACGGTCGCA TCGTACATAT TGACGACGGC ATGACGAAGC GGTCGGTTAC CGTCGAACAA
TTCATGCCCA ACGCCTTCGG TGGATTCCAA AAAGAGCAGA CTGTCCTGCA GATGCAGAAC
AGCCACTGA
 
Protein sequence
MKRSFRIMMV LTGMALLGGC SESDNLSHLQ AFVANGPKIS AHVTPLPKTP AYQPKAYENP 
TNRDPFTSFS ELLLRKEAAA ASTGPRPASH GPLQPLEKYA LSSLSVTGIV RDSQGKLWAV
LLTPDHKVYR ATVGSYIGTH DGRIVHIDDG MTKRSVTVEQ FMPNAFGGFQ KEQTVLQMQN
SH