Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lferr_0883 |
Symbol | |
ID | 6876848 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
Kingdom | Bacteria |
Replicon accession | NC_011206 |
Strand | - |
Start bp | 842860 |
End bp | 845214 |
Gene Length | 2355 bp |
Protein Length | 784 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 642788765 |
Product | type IV pilus secretin PilQ |
Protein accession | YP_002219340 |
Protein GI | 198283019 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4796] Type II secretory pathway, component HofQ |
TIGRFAM ID | [TIGR02515] type IV pilus secretin (or competence protein) PilQ |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.126317 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 46 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCCCTG CATCCAGTAC CTCCCGCCAC ACTCGCCGTG TCACCGCAAG TTCGCACGCA CGGCTTCCGC TGCCGAGGCC GGCAACCCTT GCCGTTCTGG CGGCGGCCCT CTGCCTGAGT TCTGGCGCCG CGTGGGCGGA GAGCCTCATC AGCAGCATCA CGCCGGTACA GGATCAGCAT GGCACGGCCT TTCTCATCCG CAGTGACAGT CGCCCCGCCT ATGATGTGAA TACGCTCAAC GGTGGCTACC GCGTACGCAT CGATTTCAGT GATGCCCACT TCCTGAACTC CGTGGGCGCC GTCGCGGGCA GCGGCGCGGT GCAAAATGTA CTCACCGAGA ATATCGGTCA CCACGCCCGC CTTGATCTGC TGCTGAAGTC GCCGCAGGCG ATCATGATGG AGCCCGCCCC CGAGGGTTAT CGACTCGCGC TCGTCGCCGA CAAAGGCAAC ACGGCGACTT CTGCAGCGAG TACTTCGACG GTACCCGCTA CCAGCAACGT GGCCCCCGCA CCGGCGGCCG CGGCACTACC TGTGCCCGCA CCGACCACCG CTTCCGGCAC CCAAATCAAC GACCTGAGTT TCAAGCGTGG CAAAAACGGC GGCGGCATCC TCGATCTTTC CATCTCCGGT CCGCAACCGC AGATGAACGT CACCCGCGAG AACGGTGCTC TCGTCGTCGA ACTCAAAGAC ACGGGCATTC CGTCCAGCTA TACTCACCGC TTTGGCGTCA GTCAGTTCGG CACCCCGGTT CAGTATGTGG ATAGCTATCC CCTGGGGCGA AGTACCCGTC TGGTATTCGC CATTCATGGT CCTTACGAGT ATTCGGCTTA TCAACTGGGG CAGCGCACCT TGATCGATGT ACATCCCAAA GCCGCTGAGG CCGTCGACAA TCCCAACGCC GGCGCGCGCC TGAGCATGGA CTTCCAGAAC ATCAGCGTGC GCGATGCCCT GCAGGTCATC GCCGACTTCA CCCATCAGAA CATCGTCGTC TCCAACAATG TGACCGGCAG CCTTTCCATC CGCCTCAAGA ATGAGCCGTG GGAACAGGCC TTCCAGGTGA TCCTGCAATC TCAGGGGCTG GCGGTAAAAC ACATCGGCAA TATTCTCTGG GTGGCGCCCG CCAGCCAGAT CACCAGCCAG GAAGAGGCAC AACTGAAGGC CGACGCCAGC AAGCGCAAGC TGGAACCGCT GGAGACGGAA CTGATCCGGA TCAGATACGC CAAAGCCTCC GAGATCGCCT CGCTGTTGCA GGGTTTCGAC CAGAACAAGG AACCCGGCGG CGGAGAGACC GGCAACGAAA TGAATCCGGC GCAGAATGCC GCACTGGCCA GTGCGCTGGG CATTCCCAAC TCCAGCCTCA TCGGTAATTC CCTGCTCGGC CCACGCGGCT CCGTGGCGGT AGTGACTCGC ACCAACAGCC TGCTGGTCCG GGATACCCCC CAGGACATCG CCAATATCAA ACACCTGATC GCCAAGATCG ATCGTCCGGT CCCCCAGGTA TTGATCGAAG CGCGCATCGT CCAGGTCACC ACCAGTGCGG CACAGTCCCT GGGCGTAAAC TGGGGCGGCA CCTATACCAG CGGCGGTGGC GGTGGCATCG TCAACCTGTC GGGCACCGGT GCTACGGGGG TTACCTCGAC ACAGGGCGGC GCCTACCCGA TGTCCGGAAC AACCACTACC ACCGGAACCG GCTTCACCAC CCCGGCACTG GTGAATCTGG TACCTTCCAC CGCTGGCACC GCCCTCGCCA GCATGAACCC GGCATCACTG GGTTTTGCCC TGGGCACCGC CGCCGGCAAT CGGATCCTGA ATCTGCAGCT ACAGGCTCTA CAGGCCGATA ATCGCGCCAA GATCATCTCC AGCCCCAAAG TCCTCACGCA GGACAATGAA AAAGCGGTCA TCGAACAGGG CCAGGAAATT CCCTATCAGC AGGCCACCAG CAGCGGCGCG ACGGCCGTGT CTTTCAAAAA AGCGGTGCTG AGCCTGGACG TCACCCCGCA CATCTCGCCC AACGGCAAGA TCACCCTGGA TGTGGATGCG CGCAATGACC AACCCAACTA CGCTCAGGCC ATGCCTTCCG GTATTCCCAT CAACACCCAG CAGGTCAAAA CCAAGCTGCT GGTCAATAAT GGGCAAACGG TGGTCATCGG CGGCATTTAC ACCGACTCGA CCACCCAGAA TGAAACCGGC GTTCCGCTGC TCCGGGATAT TCCCCTGCTG GGCTGGCTCT TCAAAAGCCA CATCAACAGT GTGGCCAAGA CCGAACTGTT GGTCTTCCTG ACCCCCAAGG TCGTCGGTGG CGAGTCTCCA GGGGGACTCG GCGTCGCTTC CGCCGGCAGC AATCCGGGAA CATGA
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Protein sequence | MSPASSTSRH TRRVTASSHA RLPLPRPATL AVLAAALCLS SGAAWAESLI SSITPVQDQH GTAFLIRSDS RPAYDVNTLN GGYRVRIDFS DAHFLNSVGA VAGSGAVQNV LTENIGHHAR LDLLLKSPQA IMMEPAPEGY RLALVADKGN TATSAASTST VPATSNVAPA PAAAALPVPA PTTASGTQIN DLSFKRGKNG GGILDLSISG PQPQMNVTRE NGALVVELKD TGIPSSYTHR FGVSQFGTPV QYVDSYPLGR STRLVFAIHG PYEYSAYQLG QRTLIDVHPK AAEAVDNPNA GARLSMDFQN ISVRDALQVI ADFTHQNIVV SNNVTGSLSI RLKNEPWEQA FQVILQSQGL AVKHIGNILW VAPASQITSQ EEAQLKADAS KRKLEPLETE LIRIRYAKAS EIASLLQGFD QNKEPGGGET GNEMNPAQNA ALASALGIPN SSLIGNSLLG PRGSVAVVTR TNSLLVRDTP QDIANIKHLI AKIDRPVPQV LIEARIVQVT TSAAQSLGVN WGGTYTSGGG GGIVNLSGTG ATGVTSTQGG AYPMSGTTTT TGTGFTTPAL VNLVPSTAGT ALASMNPASL GFALGTAAGN RILNLQLQAL QADNRAKIIS SPKVLTQDNE KAVIEQGQEI PYQQATSSGA TAVSFKKAVL SLDVTPHISP NGKITLDVDA RNDQPNYAQA MPSGIPINTQ QVKTKLLVNN GQTVVIGGIY TDSTTQNETG VPLLRDIPLL GWLFKSHINS VAKTELLVFL TPKVVGGESP GGLGVASAGS NPGT
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