| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lferr_0623 |
|---|
| Symbol | |
|---|
| ID | 6876585 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011206 |
|---|
| Strand | + |
|---|
| Start bp | 582475 |
|---|
| End bp | 583278 |
|---|
| Gene Length | 804 bp |
|---|
| Protein Length | 267 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 642788506 |
|---|
| Product | DNA glycosylase/AP lyase, H2TH DNA-binding |
|---|
| Protein accession | YP_002219084 |
|---|
| Protein GI | 198282763 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0266] Formamidopyrimidine-DNA glycosylase |
|---|
| TIGRFAM ID | [TIGR00577] formamidopyrimidine-DNA glycosylase (fpg) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 45 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGAGT TGCCAGAAAT AGAACTGCTC AGACAAAAGC TGCGGCGCAA TATCCTGCAC
AAGCGGGTCG GCGTCATGCA GATGCAGAAT GCCAAGGGCG AGGCACTTCC GGATGGTGCC
GGCATCAAAG ATGCCGCACT CAAAGGCAGG GCCATCACCG ACCTGCATCG CTACGGTCAA
TACCTTTTCC TGGAACTGGA TCGCAAGGAC ATCCTCGCCC TGCAGTTGGG TGGTGAGCTG
AGCGGCGAAC TCGAACGCGG CCCTGTTCAT GGGGAAGGCG GGGAAGAGCC GCGAGCGGCA
TTGGAGATAC AGATCAACGG CCAGCAGCGC CTGCGTTTTC AGGGGACCCA GTTGGGTAAC
CGCCTGCGCA TGCTGGACGA AAACAGCGAT GTGGACTTCC TCACCAAGCT CGGCCCTGAT
CCACTGATGG TGCATGGGGA AGGGCTTGGT ATATTGCGCG AGGCCCTGAG CCGTCGCCGC
AGCGCCCTGC GCAACATCCT GCTGGATGAT ACCTTCGCGC CGGGCATCGG CGGTATCTGG
GCGGATGAAA TCCTTTTTCA GGCCCGCCTG CGACCGGATC GCACCGCGAC CAGTCTCAGC
GAAGAAGAGC GCGAGCGTTT CCTGGAGCAG ATCCCCAAGG TGCTGGATCG CGCCGTGCGC
TGTCAGGCGA AGACCAACCT GCTGCCCAAG ACCTTCCTCA CCCGCCATCG GGAAGACGGG
CACTGCCCGA GTTGCGGCGG CGCGCTGGAG ACCCTTTCGG TGGGGGGTAA AAACGCGATG
CTCTGCCCAG CCTGCCAGTC TTGA
|
|---|
| Protein sequence | MAELPEIELL RQKLRRNILH KRVGVMQMQN AKGEALPDGA GIKDAALKGR AITDLHRYGQ
YLFLELDRKD ILALQLGGEL SGELERGPVH GEGGEEPRAA LEIQINGQQR LRFQGTQLGN
RLRMLDENSD VDFLTKLGPD PLMVHGEGLG ILREALSRRR SALRNILLDD TFAPGIGGIW
ADEILFQARL RPDRTATSLS EEERERFLEQ IPKVLDRAVR CQAKTNLLPK TFLTRHREDG
HCPSCGGALE TLSVGGKNAM LCPACQS
|
|---|
| |