Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lferr_0598 |
Symbol | |
ID | 6876560 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
Kingdom | Bacteria |
Replicon accession | NC_011206 |
Strand | + |
Start bp | 557405 |
End bp | 558025 |
Gene Length | 621 bp |
Protein Length | 206 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 642788481 |
Product | methylthioribulose-1-phosphate dehydratase |
Protein accession | YP_002219059 |
Protein GI | 198282738 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0235] Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases |
TIGRFAM ID | [TIGR03328] methylthioribulose-1-phosphate dehydratase |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.635649 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 40 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAGGATG ATCCGCGCAC CCATCTCGCT GCGGCGGCCC GCGATTTTTA TGCGCGGGGC TGGATGCTGG GCACCGCTGG CAACCTGTCG GCACGCAGCG ATACCGATAC CTTCTGGATC ACCGCCAGCG GCCGCCCCAA GGATCGGTTG GCCGCCGGAG ATTTCGTTCT GGTGGATCGG CAGGGTCAGG TGGTGCAGGC CCCACCGGGA CGCCAGCCTT CGGCCGAAGC CGCCATCCAT GAGACGATCT ACCGGCATGT GCCCGACGCC CGGGTCATAT TTCACGTCCA CTCCATCGAG GCCAATCTCT GCGGACACTT CGCGCGGCAG GGCCGGTTGC GTCTGCCGCC GCTGGAAATG CTCAAAGGTC TGGGCGTGCC CGATGCCGAG CCGCAGGTGG ACCTGCCGGT CTTCGCCAAT CATCTGAACG TCGCGCGGAT TGCCGAAGAT ATGGACAGGG AGTTTACCGG GGCACTGCCC CGTGTCCCCG GCGCGCTGAT TCACCTCCAT GGAGTGACGG CCTGGGGCCC GGACTTTCTG GCGGCCAGAC ACCATCTTGA ATTGCTGGAA TACTGTTTTC GTTATCTCGT GCAGGCGAAA ATCCTCGCCA TAGGAGTCTA G
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Protein sequence | MQDDPRTHLA AAARDFYARG WMLGTAGNLS ARSDTDTFWI TASGRPKDRL AAGDFVLVDR QGQVVQAPPG RQPSAEAAIH ETIYRHVPDA RVIFHVHSIE ANLCGHFARQ GRLRLPPLEM LKGLGVPDAE PQVDLPVFAN HLNVARIAED MDREFTGALP RVPGALIHLH GVTAWGPDFL AARHHLELLE YCFRYLVQAK ILAIGV
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