Gene Lferr_0598 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLferr_0598 
Symbol 
ID6876560 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidithiobacillus ferrooxidans ATCC 53993 
KingdomBacteria 
Replicon accessionNC_011206 
Strand
Start bp557405 
End bp558025 
Gene Length621 bp 
Protein Length206 aa 
Translation table11 
GC content64% 
IMG OID642788481 
Productmethylthioribulose-1-phosphate dehydratase 
Protein accessionYP_002219059 
Protein GI198282738 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0235] Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases 
TIGRFAM ID[TIGR03328] methylthioribulose-1-phosphate dehydratase 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.635649 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones40 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGGATG ATCCGCGCAC CCATCTCGCT GCGGCGGCCC GCGATTTTTA TGCGCGGGGC 
TGGATGCTGG GCACCGCTGG CAACCTGTCG GCACGCAGCG ATACCGATAC CTTCTGGATC
ACCGCCAGCG GCCGCCCCAA GGATCGGTTG GCCGCCGGAG ATTTCGTTCT GGTGGATCGG
CAGGGTCAGG TGGTGCAGGC CCCACCGGGA CGCCAGCCTT CGGCCGAAGC CGCCATCCAT
GAGACGATCT ACCGGCATGT GCCCGACGCC CGGGTCATAT TTCACGTCCA CTCCATCGAG
GCCAATCTCT GCGGACACTT CGCGCGGCAG GGCCGGTTGC GTCTGCCGCC GCTGGAAATG
CTCAAAGGTC TGGGCGTGCC CGATGCCGAG CCGCAGGTGG ACCTGCCGGT CTTCGCCAAT
CATCTGAACG TCGCGCGGAT TGCCGAAGAT ATGGACAGGG AGTTTACCGG GGCACTGCCC
CGTGTCCCCG GCGCGCTGAT TCACCTCCAT GGAGTGACGG CCTGGGGCCC GGACTTTCTG
GCGGCCAGAC ACCATCTTGA ATTGCTGGAA TACTGTTTTC GTTATCTCGT GCAGGCGAAA
ATCCTCGCCA TAGGAGTCTA G
 
Protein sequence
MQDDPRTHLA AAARDFYARG WMLGTAGNLS ARSDTDTFWI TASGRPKDRL AAGDFVLVDR 
QGQVVQAPPG RQPSAEAAIH ETIYRHVPDA RVIFHVHSIE ANLCGHFARQ GRLRLPPLEM
LKGLGVPDAE PQVDLPVFAN HLNVARIAED MDREFTGALP RVPGALIHLH GVTAWGPDFL
AARHHLELLE YCFRYLVQAK ILAIGV