| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lferr_0586 |
|---|
| Symbol | |
|---|
| ID | 6876548 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011206 |
|---|
| Strand | + |
|---|
| Start bp | 546860 |
|---|
| End bp | 548152 |
|---|
| Gene Length | 1293 bp |
|---|
| Protein Length | 430 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 642788469 |
|---|
| Product | isocitrate dehydrogenase, NADP-dependent |
|---|
| Protein accession | YP_002219047 |
|---|
| Protein GI | 198282726 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0538] Isocitrate dehydrogenases |
|---|
| TIGRFAM ID | [TIGR00183] isocitrate dehydrogenase, NADP-dependent, prokaryotic type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACCATGG CGCATGTTCA GATTCCGGCT CAGGGGAAGC CCATCACCCA GGTGGACGGG
GTGCTGCGGG TGCCCGATCA ACCGATTATT CCCTTCATCG AGGGTGATGG GATCGGCTGC
GATGTCACGC CGGCCATGCG TGGGGTGGTG GATGCCGCGG TGCAGGCCGC TTATGGCGGC
CAGCGGCGGA TCGCCTGGAT GGAGCTTTTT GCCGGGCAGA AGGCGGTGAC GCTCTACGGT
GCGGGGCAGT ATCTTCCCGA AGAAACCATG GCCGCTATCC GCGAGTATAA GATCGCCATC
AAGGGGCCGC TGGAAACCCC GGTGGGTGGC GGAATCCGCA GCCTCAATGT GGCGCTGCGC
CAGGATCTGG ACCTTTACGT CTGCCTGCGG CCGGTGCGTT ATTTTGCGGG TACGCCCAGC
CCCATGTGCC ATCCGGAAAA GGTCGACATG GTCATCTTCC GGGAAAACGC CGAGGACATT
TACGCGGGTA TCGAGTGGCC GGCGGGCAGT CCGGAAGCCG AAAAAATCAT CCGCTTTTTG
CAGGAAGAGA TGGGGGTCGG CAAAATCCGC TTCCCCGCCA GTTCCGCCAT CGGCATCAAG
CCGGTGTCGG TGGAGGGTTC GGAGCGTCTG GTGCGCCGCG CCATCCAGTA TGCGCTGGAA
CATGGCAAAC CTTCGGTGAG TCTGGTGCAC AAGGGCAATA TCATGAAGTT CACCGAGGGC
GGCTTCCGCG ACTGGGGCTA CGCCCTGGCC GAGCGGGAGT TCGCCGGACG GGTCTTCACC
TGGCGGCAGA AAGCGGCGAT TAGCCGGGCG GAGGGCAAGG CGGCGGCGCA GCAGGCCGAG
CAGCGGGCCG TCGCCGATGG CAAGCTGATC ATCAAGGATG TCATCGCCGA CAACTTCCTG
CAGCAGATTC TGTTGCGGCC GGAAGATTAT TCCGTGGTGG CCACGCTCAA CCTCAACGGC
GACTATATTT CCGATGCGCT GGCGGCGGAG GTGGGCGGCA TCGGCATGGC GCCGGGGGCG
AACCTCTCCG ATACCCATGC GATTTTTGAG GCCACCCACG GCACGGCGCC GGACATCGCC
GGGCAGGGCA GGGCCAATCC CAGTTCGCTG ATCTTGTCGG CGGTGATGAT GCTGGAGCAT
CTGGGTTGGG GTGAGGCGGC GACGCGCATC ATGGCGGCCG TGAACGCGGC CATCGCCGGC
GGCGAAGTGA CCGGTGATCT GGCGGCGTTG CGCGGTGACG TGCCTGCCCT CGGTACCGCG
GAGTTCAGTG CGGCGCTGAT GCGTCGTTTG TGA
|
|---|
| Protein sequence | MTMAHVQIPA QGKPITQVDG VLRVPDQPII PFIEGDGIGC DVTPAMRGVV DAAVQAAYGG
QRRIAWMELF AGQKAVTLYG AGQYLPEETM AAIREYKIAI KGPLETPVGG GIRSLNVALR
QDLDLYVCLR PVRYFAGTPS PMCHPEKVDM VIFRENAEDI YAGIEWPAGS PEAEKIIRFL
QEEMGVGKIR FPASSAIGIK PVSVEGSERL VRRAIQYALE HGKPSVSLVH KGNIMKFTEG
GFRDWGYALA EREFAGRVFT WRQKAAISRA EGKAAAQQAE QRAVADGKLI IKDVIADNFL
QQILLRPEDY SVVATLNLNG DYISDALAAE VGGIGMAPGA NLSDTHAIFE ATHGTAPDIA
GQGRANPSSL ILSAVMMLEH LGWGEAATRI MAAVNAAIAG GEVTGDLAAL RGDVPALGTA
EFSAALMRRL
|
|---|
| |