| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lferr_0583 |
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| Symbol | |
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| ID | 6876545 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011206 |
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| Strand | - |
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| Start bp | 541351 |
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| End bp | 543189 |
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| Gene Length | 1839 bp |
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| Protein Length | 612 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 642788466 |
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| Product | Lytic transglycosylase catalytic |
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| Protein accession | YP_002219044 |
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| Protein GI | 198282723 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1388] FOG: LysM repeat |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGAAGC GAGTTCTCGC TATGGCCACG CTGGTGGCAC TCGGCGGCAT TCCTATGGCA
TGGGCGGATA GCCAAACCAT AGGCCTGCAA CAAGGTGACC TCCAGACCGG CGTAGCACAG
GCCCTGAACG CCGGCGCGCA GAACGTGGAC CTGCAAAGCG GCGAACCGGT AGCGGGGCCG
GTCGGCAACG TCTCCGGCCT GTCGGCCACC CTGCAGCAGT TCGAGGCATC GGGCGCCTTT
GGCAACCAGA CGGGAGCCGG CAATGTCTGG ACCCATATCG ACGACGGCCT GCGCATCAGC
GACGTCTCCC GCTTGGAAGT GGATAAATGG CGTACCTGGT TCCTGCAACA TCAGGGCAAG
CTGGAACAGA TCCTCGACAA CTCCCGCCCC TTTCTGTATT ACGTGGTGAA CGCCGTTGCG
GAACGCGGCA TGCCCATGGA ACTGGCGCTG CTGCCGGCCA TCGAGAGCGG TTACAACCCC
AAGGCCTACT CCCCGGCGGC CGCGGCGGGC CTCTGGCAAT TCATACCCGG CACCGCACGC
AATTTCGGCC TGCAAAACAC CCGCTATGGC GATCCCCGCC TGAGTCTCAT CGCCTCCACC
AACGCCGCCC TCGATTACCT CTCCTACCTC TACAACTATT TCGGCGGCAA CTGGCTCCTC
GCCATCGCCT CCTACAACGC CGGGCAGGGT ACCGTTTCCG CCGCTATCCA GCAGAATGTC
GCGGCGGGTA AGCCCACCGA TTTCTGGGAC CTCTCTCTGC CGCAGCAAAC CGAAGACTAC
GTTGCCGAAC TCCTCGCCCT GGCGCAGGTC ATCAAAAATG CCAAGGCCTA CCATGTCTCC
CTGCCCGCCA TTCCCAACGC GGCACACATC GCGGTCGTGA CCACGCCCAA ATCCGTGGCC
CTGAACGTGG CGGCGAACCT GATGAACATG CCGGTCAGCG AACTGCAGCA CCTCAATGCC
GGGTTGAGCT ACGGCGTCGC CCCGGCCGAC TACCATCTGG TGGTGCCCAA AGACAAGGCC
GCCACCCTGA AGAGCGCGCT GCTGACCATG CCCCAGGAAG CCGCCGCTCA GCCCGTCGTT
GCGCTGCGGC CAGCGCCCAG CCCGGCCTTC CGTCGCGTCA TGCTTCGCCC CGGTGAGACG
CTCTGGCATC TGGCGCAACG GGCCGGCGTC AGCGTCACCA ATCTCGAGCG CTGGAATCAC
ATCCGTTCCG CGCGCGACCT GCAGGTCGGG CAACACCTGG TCGTCTACGG CGCCGGTGGA
TCCGGCCATC TGCAAAACGC CGTCTATGCC CGGAGCCGGG CGCGGGCGCT CACCGTGCGT
CCCGGCAACA CGCCCTCCCA GCTCGCGCAG CGGGCCGGCG TCAGCGTCAA GGACCTCATG
CGCTGGAACC ATATCCGTTC CGCGCGTGAC CTGCAGATCG GTGAAACCCT GCATATCCCG
GGTGGCGGTG GTAGCAGGCC CGCACAGGTC TATACCGCCG CGCGCGGCAA CCGGCGCCTC
ACCGTGCGGC CCGGTGAAAG TCTTTGGCAA ATCGCCCGGC GCGCCGGAGT GGGCGTCTCT
CTGCTGGCCC GCGCCAACCA TCTCACCGAA CGGACCATCC TCCATCCCGG ACAGGTGCTG
AACATCCCGG CACAAACCAT GGTCGCCGCC ATCAGCCGCC GGCAGGAACG CGCCGCCAGC
CGGGCGCGAA CGACGACTTA CGTGGTGCGT CCGGGCGACA CGCTCTGGCA GATCGCCCAG
CAGTTCCATG TCCAGCCCAA GTCGCTGATT CAATGGAATC GCCTGGCCTC CGCCAGCGAA
ATTCAACCGG GCTCACGCCT CACCATTTAT ACGCGCTGA
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| Protein sequence | MKKRVLAMAT LVALGGIPMA WADSQTIGLQ QGDLQTGVAQ ALNAGAQNVD LQSGEPVAGP
VGNVSGLSAT LQQFEASGAF GNQTGAGNVW THIDDGLRIS DVSRLEVDKW RTWFLQHQGK
LEQILDNSRP FLYYVVNAVA ERGMPMELAL LPAIESGYNP KAYSPAAAAG LWQFIPGTAR
NFGLQNTRYG DPRLSLIAST NAALDYLSYL YNYFGGNWLL AIASYNAGQG TVSAAIQQNV
AAGKPTDFWD LSLPQQTEDY VAELLALAQV IKNAKAYHVS LPAIPNAAHI AVVTTPKSVA
LNVAANLMNM PVSELQHLNA GLSYGVAPAD YHLVVPKDKA ATLKSALLTM PQEAAAQPVV
ALRPAPSPAF RRVMLRPGET LWHLAQRAGV SVTNLERWNH IRSARDLQVG QHLVVYGAGG
SGHLQNAVYA RSRARALTVR PGNTPSQLAQ RAGVSVKDLM RWNHIRSARD LQIGETLHIP
GGGGSRPAQV YTAARGNRRL TVRPGESLWQ IARRAGVGVS LLARANHLTE RTILHPGQVL
NIPAQTMVAA ISRRQERAAS RARTTTYVVR PGDTLWQIAQ QFHVQPKSLI QWNRLASASE
IQPGSRLTIY TR
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