Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lferr_0547 |
Symbol | |
ID | 6876503 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
Kingdom | Bacteria |
Replicon accession | NC_011206 |
Strand | + |
Start bp | 505685 |
End bp | 506377 |
Gene Length | 693 bp |
Protein Length | 230 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 642788424 |
Product | outer membrane lipoprotein carrier protein LolA |
Protein accession | YP_002219008 |
Protein GI | 198282687 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG2834] Outer membrane lipoprotein-sorting protein |
TIGRFAM ID | [TIGR00547] periplasmic chaperone LolA |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.117593 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.000046415 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCAGCAGC ACCCCCTGGT CGTGACTGAC CGTTTGCGCC TCAGGCGCGA CCCATCACGG GCTTCGGGCC TGGCTCGCTG GTTTCTGGTG CCGCTGCTGA TTTTGGGCGG TATCCAGCTC GCGGCTGCCG CCACGGGTCT GGCGATGTTG CAGGATTTTT TCCAGAAAAC CCACACCATC ACGGCCCAGT TCCGTCAGGA AGTAGCCAAC CATGACGGCC GGATCGTCAA GCGTACCAGT GGCAAGCTGT GGATTTCCCG CCCCGGCAAA TTCCGCTGGG ACTACGACGG CCGTAACGGG CAAACCATCG TGTCCAACGG TGAGAAGGTC TGGCTTTATG AACCGGCTCT GGAACAGGCC ACGGTGCAGC CCCTCGGCAA AGCTATCGGG TCCACCCCTG CGGCGCTGAT CGCGGGTAAC GATGACCTTG GCCGGCGCTT CAGGATTACA GACCTGGGCG AAAAAGACGG ACTCCGCTGG CTGCTGTTGC ATCCCAAAAC GGGGCAGGAT CAGGGCTTCA CCGCGTTGCG CCTGGGCTTT GATGCACAGG GCGCGCTGCG CGAGATGCGC ATGGAAGACG CTTTCCAGCA ACAGACCGTC CTCCGCTTTG AGCATATCAG GATCAATCAC CCCATTTCGG CGCAGGAGTT TCAGTTCACC CCGCCTGCCG GCGTAGATGT TCTCTCTCAA TAA
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Protein sequence | MQQHPLVVTD RLRLRRDPSR ASGLARWFLV PLLILGGIQL AAAATGLAML QDFFQKTHTI TAQFRQEVAN HDGRIVKRTS GKLWISRPGK FRWDYDGRNG QTIVSNGEKV WLYEPALEQA TVQPLGKAIG STPAALIAGN DDLGRRFRIT DLGEKDGLRW LLLHPKTGQD QGFTALRLGF DAQGALREMR MEDAFQQQTV LRFEHIRINH PISAQEFQFT PPAGVDVLSQ
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