| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lferr_0542 |
|---|
| Symbol | |
|---|
| ID | 6876498 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011206 |
|---|
| Strand | + |
|---|
| Start bp | 499884 |
|---|
| End bp | 500972 |
|---|
| Gene Length | 1089 bp |
|---|
| Protein Length | 362 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 642788419 |
|---|
| Product | tRNA pseudouridine synthase D TruD |
|---|
| Protein accession | YP_002219003 |
|---|
| Protein GI | 198282682 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG0585] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR00094] tRNA pseudouridine synthase, TruD family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.238992 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.000000811718 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGAAA GTCTGCCGCG CATCTATCCC GCAGAGAGCG GTCTGCTTGG CGCCGAAATG
AGGCAGTCTC CAGAAGACTT TCAGGTCACG GAACTGCTGC CTTTTGCCCC ATCCGGTTTG
GGCGCCCATC ACTGGCTGGT AGTGGAGAAG CGCGGCCTCA ATACTCAGGA TGTGGCCAAT
CGTCTGGCGC GTTGTGCCGG GGTGGCGGTC CGGGATGTGG GTTTTGCCGG TCTCAAGGAT
CGTCAAGCCG TTACCCGGCA GAGTTTTACG GTGCCGGCCA CGGCGGGTAG CAACCCGGAT
TGGGGCAGTC TGGAAGACGA CAGTCTGCAC CTTCTACAGG TCGGCCGCCA TGACCGTAAA
TTGCGTCGGG GCGTGTTACG TGGCAACCAC TTTCAACTCA CCTTGCGCGC CACCACGGGA
GCACACAGTC TCTGGGACGC CCGCCTGCAA ATTCTCCGGA AACGAGGATT CCCCAACTAT
TTCGGTGCCC AGCGCTTCGG GCACCGAAAT TTGCAAGAGG CCGCGCGACT GTTATCCGGA
CAGCCGATGC GAGTAGACCG CCATCGGCGC GGCCTGCTCT GGTCCGCGGC CCGCTCCGCC
CTGTTCAATC TGGTCCTCGC CGAGCGGGTG CGGCAAGCCA ACTGGACGGA GATTCTGCCG
GGTGAAGTCG TGCAACTGGC GGGCTCGCAC AGCATTTTTC TGGCGGAGGA CGATGATCTC
GCGGATTTGC AGGCGCGCGC CACCGACTGG GACCTGCACC CCACCGGCCC TTTGCCGGGT
CGTGGCGGGT TGGCGCCGAC CCTGGTTGCC GCCGCGCTGG AGACCTCGGC CCTGGGCGCG
GGGCCCGTCA TCGCCGGTAC GACAGACGAT GGCCTCCATT GGGCACGTCG TCTTGCAGAA
CAAGGGCTGG ATGCCGCGCG GCGCCCCTTG CGCGCGCGTC CGGAAAACCT CAGCGGTCGC
TGGGAGGATG CACAGACTCT GATTCTGAGT TTTTTCCTCC CTGCGGGCGT ATTCGCGACG
AGTTGTGTGG AAGGCCTTTT GGGGAGGGAA ATGGCGGAAG CGCAAAGCCT TGACCTTTGT
GTTGACTAG
|
|---|
| Protein sequence | MSESLPRIYP AESGLLGAEM RQSPEDFQVT ELLPFAPSGL GAHHWLVVEK RGLNTQDVAN
RLARCAGVAV RDVGFAGLKD RQAVTRQSFT VPATAGSNPD WGSLEDDSLH LLQVGRHDRK
LRRGVLRGNH FQLTLRATTG AHSLWDARLQ ILRKRGFPNY FGAQRFGHRN LQEAARLLSG
QPMRVDRHRR GLLWSAARSA LFNLVLAERV RQANWTEILP GEVVQLAGSH SIFLAEDDDL
ADLQARATDW DLHPTGPLPG RGGLAPTLVA AALETSALGA GPVIAGTTDD GLHWARRLAE
QGLDAARRPL RARPENLSGR WEDAQTLILS FFLPAGVFAT SCVEGLLGRE MAEAQSLDLC
VD
|
|---|
| |