Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lferr_0524 |
Symbol | |
ID | 6876480 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
Kingdom | Bacteria |
Replicon accession | NC_011206 |
Strand | + |
Start bp | 483769 |
End bp | 484788 |
Gene Length | 1020 bp |
Protein Length | 339 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 642788401 |
Product | DNA-directed RNA polymerase subunit alpha |
Protein accession | YP_002218985 |
Protein GI | 198282664 |
COG category | [K] Transcription |
COG ID | [COG0202] DNA-directed RNA polymerase, alpha subunit/40 kD subunit |
TIGRFAM ID | [TIGR02027] DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.873664 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 0 |
Fosmid unclonability p-value | 0.000000000028913 |
Fosmid Hitchhiker | No |
Fosmid clonability | unclonable |
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Sequence |
Gene sequence | ATGACTGAGG TTGGAGAGCT GTTGCGCCCG CAGGGCGTTG ACGTGGAAGT GATTTCAGCA CGCCGTGCGC GTCTGGCCCT TGGGCCCTTG GAGCGTGGTT TTGGCCACAC TCTGGGTAGT GGGTTGCGCC GGGTGTTGTT GTCGTCTCTC AAAGGTGCGG CGGTTACCGA GGTGGAGATT GAAGGGGTGT TGCACGAGTA CTCCAGCATC GAGGGCGTGC AGGAAGACGT GGTGGATATC CTGCTCAACT TGAAGATGCT GGCGGTACGG GCGCACGGAC GCGGAGATGC GGTGGTGACA CTGCGCAAGC GTGGCCCCGG CCAAATGACC GGCGCCGATA TCGTATCGGA ACATGGTATC GAAGTGGCGA ATCCGGAGCA GGTAATCGCC ACGCTGACCC GCGATGTGGA ACTGGTACTC CGTTTGCGTA TTGACGAAGG ACGCGGCTAC GACGCGGCGG CTACGCGACG CCAGTCCCAT GAAAAGCGTA TCGGTGTGAT GGCTCTGGAT GCGAGTTTTA GTCCGGTGCT GCGGGTGAGC TATCTGGTGG AAAACGCCCG GGTAGAGCAA CGTACCGACC TGGATCGTCT AATACTGGAT GTCGAAACCA ATGGTGTGGT GGATCCGGTC TGGGCGGTGC AGGAGGCAGC CCGCATTTTT CGCAGCCAGC TCGGCGTGCT GGCAGGTGCG GAAACCCGGG AAATACCCGA GGCGTCGCAG GTGCAGGTCA GTCAGAGCCT TACGCCCCTG TTGATTCGTC CGGTCGATGA TCTGGAACTC ACGGTGCGGT CGGCGAACTG CTTGAAGGCC GAAGACATTT TTTATATCGG CGATCTGGTG CAGAAATCGG AGCAGGAACT TTTAAAGGCG CCTAATCTGG GACGCAAGTC GCTCAATGAG ATAAAGGAAG TTTTGGTGGC GCATGGCCTG ACGTTGGGGA TGCGACTCGA CAGCTGGCCG CCGGAAAACC TGCCGCCGGT GCCCGGGCGG GCGGCCGATA CGGACTCGAT CATCGGCTAA
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Protein sequence | MTEVGELLRP QGVDVEVISA RRARLALGPL ERGFGHTLGS GLRRVLLSSL KGAAVTEVEI EGVLHEYSSI EGVQEDVVDI LLNLKMLAVR AHGRGDAVVT LRKRGPGQMT GADIVSEHGI EVANPEQVIA TLTRDVELVL RLRIDEGRGY DAAATRRQSH EKRIGVMALD ASFSPVLRVS YLVENARVEQ RTDLDRLILD VETNGVVDPV WAVQEAARIF RSQLGVLAGA ETREIPEASQ VQVSQSLTPL LIRPVDDLEL TVRSANCLKA EDIFYIGDLV QKSEQELLKA PNLGRKSLNE IKEVLVAHGL TLGMRLDSWP PENLPPVPGR AADTDSIIG
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