| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lferr_0496 |
|---|
| Symbol | rpsJ |
|---|
| ID | 6876452 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011206 |
|---|
| Strand | + |
|---|
| Start bp | 471091 |
|---|
| End bp | 471399 |
|---|
| Gene Length | 309 bp |
|---|
| Protein Length | 102 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 642788373 |
|---|
| Product | 30S ribosomal protein S10 |
|---|
| Protein accession | YP_002218957 |
|---|
| Protein GI | 198282636 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0051] Ribosomal protein S10 |
|---|
| TIGRFAM ID | [TIGR01049] ribosomal protein S10, bacterial/organelle |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.250229 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
|---|
| Fosmid unclonability p-value | 0.00000000405496 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGACAGTT CCAAGATTCG CATCCGTCTT AAATCATATG ATTATCGCAT GCTCGATATT
TCCGCTGCGG AAATCGTAGA AACCGCACGC CGGACCGGTG CGCGTGTTTG TGGCCCGATT
CCCCTTCCCA CAAAAATCGA ACGTTTTACG GTTTTGCGCT CGCCGCATGT GGATAAAAAT
GCGCGTGATC AGTTTGAACA GCGTACGCAC AAGCGCTTAC TGGATATTCT CGATCCCAAC
GACAAGACGG TGGATGCCCT GATCAAACTG GATCTGGCGG CTGGCGTCGA TGTCGAGATC
AAGCTGTAA
|
|---|
| Protein sequence | MDSSKIRIRL KSYDYRMLDI SAAEIVETAR RTGARVCGPI PLPTKIERFT VLRSPHVDKN
ARDQFEQRTH KRLLDILDPN DKTVDALIKL DLAAGVDVEI KL
|
|---|
| |