| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lferr_0491 |
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| Symbol | |
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| ID | 6876447 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011206 |
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| Strand | + |
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| Start bp | 462607 |
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| End bp | 466770 |
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| Gene Length | 4164 bp |
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| Protein Length | 1387 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 642788368 |
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| Product | DNA-directed RNA polymerase, beta' subunit |
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| Protein accession | YP_002218952 |
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| Protein GI | 198282631 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.418515 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00000215542 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGATGCGT TGAAAGACTT ACTGAAGCTC TTCAAACAAA ACGATCAGCA GGAAGAATTC
GATGCGATTC GGATCGGTAT CGCGTCTCCG GATAAGGTGC GGTCATGGTC TTTCGGTGAG
GTAAAAAAGC CCGAGACGAT TAATTACCGG ACCTTCAAAC CGGAACGCGA AGGTTTGTTC
TGTGCCAAGA TCTTTGGACC GATCAAAGAC TACGAGTGCC TCTGCGGCAA GTACAAGCGC
CTGAAACACC GCGGTGTGGT CTGCGAAAAA TGCGGTGTTG AGGTAACCCA GGCGAGGGTC
CGCCGCGAGC GGATGGGACA CATTGAACTC GCCAGTCCTG TCGCCCACAT CTGGTTCCTC
AAATCTCTGC CGAGTCGTAT GGGCATGATT CTCGATATGC CCCTGCGTGA TATCGAGCGG
GTCCTCTATT TCGAAGCGTA TGTGGTCGTT GATCCGGGGG TGACCGCGCT GGAACGCGGG
AACATCCTTA CCGAAGACCA GTACCTGGAC GCCCTGGAAG AGCATGGGGA TGAGTTTGCA
GCAAAAATGG GCGCAGAGGG TATTCGTGAC CTGCTGCGTG GCATACCCCT GACTCAGGAA
ATTGAGCAGA TCCGTAATGA ACTGCGGGAG AGCAATTCCG ACACGAAGAC CAAGAAGCTC
AGCAAGCGGT TGAAGATCCT GGAGGCCTTT GAACAGTCGG GCAATCGTCC TGAATGGATG
ATCATGGAAG TTCTTCCGGT GCTGCCCCCG GACCTGCGCC CCCTGGTGCC ACTGGATGGC
GGCCGTTTTG CAACCTCTGA TCTCAACGAT CTCTACCGGC GGGTCATCAA TCGCAACAAC
CGGCTCAAGC GCCTGCTGGA ACTAAAGGCG CCGGACATCA TCGTGCGCAA CGAAAAACGC
ATGTTGCAGG AAGCCGTGGA CGCGCTGCTC GATAACGGTC GGCGCGGACG TGCCATATCG
GGACCCAACA AACGCCCACT CAAGTCACTT GCGGATATGA TCAAGGGCAA GCAGGGCCGC
TTCCGTCAGA ATCTGCTGGG TAAGCGGGTG GACTACTCCG GCCGCTCGGT GATCGTCGTC
GGACCTGAGC TGCGCCTGCA CCAGTGCGGT TTGCCGAAGA AGATGGCCCT GGAGTTGTTC
AAGCCATTCA TTTTCAACAA GTTGGAAGAG CGTGGGCTGG CGACCACCAT CAAGGCCGCC
AAGCGTTTGG TCGAGCAGGA AAAACCGGAA GTCTGGGATA TCCTTGAAGA GGTGATTCGC
GAACATCCGG TCATGCTGAA CCGCGCGCCA ACCTTGCATC GTCTGGGTAT CCAGGCCTTT
GAACCGGTCC TGATCGAAGG CAAGGCCATC CAACTGCATC CACTGGTATG TGCTGCATAC
AATGCGGATT TTGATGGCGA TCAGATGGCT GTGCACGTCC CGCTGTCGCT GGAGGCGCAG
TTGGAAGCCC GGACCCTGAT GATGTCCACC AACAATATTC TCAGCCCGGC CAATGGTGAG
CCCGTTATCG TCCCGTCCCA GGACATCGTC CTCGGACTCT ACTACGTCAG CCAGGAGCGG
GCCGACGCCA AGGGCACCGG CGGAGTCTTC GCGGATGCGG CAGAGGTGCG GCGCGCTTAT
GAAACGGGCA ACCTGGGTCT TCACGCCCGT ATCACCGTGC GCTTTCGCGG TGAGCGTATC
GATACCACGG CAGGACGCGC CCTGCTCGGG GATATTCTCC CTGAGGGCCT TCCGTTCAGT
GTCATCAACC GGGTGCTGAA GAAAAAGGTG ATCGGCGAAC TCATCAATAC CTGTTACCGG
CGTTTGGGTA TCAAGGATAC GGTTATCTTT GCGGATCAGT TGATGTATAC CGGCTTCCGT
ATGGCGACAC GCGCAGGCAT TTCCTTCGGT GCTGGGGATA TGGTCACGCC GCTGGAAAAA
GAGGGCATTC TGGCTCGGTC CGAAGATGAG GTCAAAGCCA TTCAGGCCCA ATACACCTCG
GGTCTGGTGA CTGAGGGTGA ACGCTATAAC AAGGTCGTCG ACATCTGGTC GCGGGCTACC
GATGAAGTTG CCAAAGCCAT GATGGATCGG GTCAGTAAGG ATACCGTGTA CCTCCCGGAC
GGCAGCTCGG TGCAGCAGGA TTCGTTCAAC TCGATCTTTA TGATGGCGGA TTCCGGCGCC
CGAGGTTCGG CGGCGCAGAT TCGCCAGCTT GCAGGTATGC GCGGCCTGAT GGCGAAGCCC
GACGGTTCTA TTATCGAGAC TCCCATCACC GCAAATTTCC GCGAGGGACT CAACGTCCTG
CAATACTTCA TTTCCACTCA CGGTGCCCGC AAGGGGCTTG CAGATACCGC GCTGAAAACC
GCCAACTCCG GCTATTTGAC CCGGCGTCTG GTAGACGTTA CCCAGGATCT GGTGGTGGTC
GAGACCGATT GCGGATCGGA GGAAGGCCTT CCCATGACCT CCCTCGTCGA GGGCGGTGAG
ATCATCGAAC CTCTGCGCGA CCGCGTGCTG GGTCGTGTAG TTGCGGAGGA TGTGGTCCAC
CCCAACACCG GTGAGATTGT CATCCCCCGC AATACCCTGC TGACAGAGCG GCATCTCAGT
CAGTTGGACG AGCTGGGTGT GGATGCACTG AAGGTACGTT CGCCCCTGAC CTGCCGGTCA
CGCCATGGGG TCTGTGCACT GTGTTATGGG CGTGACCTGG CACGTGGGCA TCTAGTCAAT
GCGGGTGAGG CAGTCGGCGT TATCGCTGCG CAATCCATTG GTGAACCGGG CACCCAGCTC
ACCATGCGTA CTTTCCACAT CGGTGGTGCG GCCAGTCGTT CTGCTGCGCA AAGCAGTATC
GATATCAAGC AGGGCGGGGT TTTTCGTTAT CAGCCCAACC TTCGCCTGGT CACGCACTCC
AGCGGACGCC ACGTAGTGGT GGGCCGGAAT GGGGAAGTTA CCGTCACTGA CGAACAAGGC
CGGGAAAAAG AGCGTTACAA GGTGCCCTAT GGTGCCACCA TTCTGGTGGA TGACAACGCC
GCGGTCACAG CGGGTCGTCG GGTCGCGGAA TGGGATCCGC ATACGCGGCC CATTGTCAGT
GAGGTCGGTG GCAAAATTTC TCTGAAAGAT GCGGTGGAAG GCGCGAGCGT AGCCATCCAG
ACCGACGAGA TCACCGGGCT GTCGACACTT GTCGTCATCG ACGCGAAGCA ACGGCCACCC
CAGGGGCGCG ATTTGCGGCC GGTGATCAGT CTGCTGGACG AGCATGGCCA GGACCTGAAG
CTGCCCGGTA CTGACCTGCC CGCACGTTAT TTCCTGCCGG CAAAGGCGAT TATCGCGGTG
CACGAAGGTA TGGAGATTCA TCCCGGAGAC ATTCTGGCAC GTCTGCCGGT GGGTACCACA
AAGACGCGCG ACATTACCGG TGGTCTGCCC CGTGTGGCGG AACTGTTCGA GGCCCGGCGT
CCCAAGGACT TCGCTGTTAT CGCGGAGCAT GAGGGCATCA TCGGCTTCGG GAAAGACACC
AAGGGCAAGC AGCGACTGAT CATCACCGAC GAGAGCGGGG AACAGCATGA ATATCTGATT
CCCAAGGGTC GCCATGTGAC CGTGTACGAA GGGGAGCGGG TCAGCCCGGG TGAGCAGCTT
GTCGAGGGCC AGCCGGTTCC GCACGATATC CTGCGTGTGT TGGGTGTGCA GGCTCTCGCC
AACTACATTG TCGATGAGGT GCAGGACGTA TACCGTCTGC AGGGCGTGCG TATCAATGAT
AAGCACATCG AAGTCATTCT GCGCCAGATG CTGCGTAGGG TCGAAGTGAC GTCCAGTGGG
GACAGTACCT TCATTCCCGG AGACCAGGTG GATCGGGCAC GGGTGGAAGA TGAAAACATC
GCGCTGGAAG CTGCCGGCAA AGAACTGCCG CGTTTCACGC CGATGTTGCT GGGCATCACC
AAGGCAAGCC TGTCTACCGA ATCTTTCATC TCGGCCGCAA GTTTCCAGGA AACCACCCGC
GTACTCACTG AGGCTGCGGT ATCCGGCAAG GTAGACGACT TGCGCGGCCT CAAGGAAAAC
GTCATCGTCG GACGTTTGAT TCCGGCGGGA ACGGGCCTGG CCTACCATGA GCATCGCCGA
CGGCTGAACC GGGGTGAACC TGTCCTTTCC TTGGAGACTG CGGTGCCGCG GGATATGCCG
GTATCGGTAA GCGATACGCC GTAA
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| Protein sequence | MDALKDLLKL FKQNDQQEEF DAIRIGIASP DKVRSWSFGE VKKPETINYR TFKPEREGLF
CAKIFGPIKD YECLCGKYKR LKHRGVVCEK CGVEVTQARV RRERMGHIEL ASPVAHIWFL
KSLPSRMGMI LDMPLRDIER VLYFEAYVVV DPGVTALERG NILTEDQYLD ALEEHGDEFA
AKMGAEGIRD LLRGIPLTQE IEQIRNELRE SNSDTKTKKL SKRLKILEAF EQSGNRPEWM
IMEVLPVLPP DLRPLVPLDG GRFATSDLND LYRRVINRNN RLKRLLELKA PDIIVRNEKR
MLQEAVDALL DNGRRGRAIS GPNKRPLKSL ADMIKGKQGR FRQNLLGKRV DYSGRSVIVV
GPELRLHQCG LPKKMALELF KPFIFNKLEE RGLATTIKAA KRLVEQEKPE VWDILEEVIR
EHPVMLNRAP TLHRLGIQAF EPVLIEGKAI QLHPLVCAAY NADFDGDQMA VHVPLSLEAQ
LEARTLMMST NNILSPANGE PVIVPSQDIV LGLYYVSQER ADAKGTGGVF ADAAEVRRAY
ETGNLGLHAR ITVRFRGERI DTTAGRALLG DILPEGLPFS VINRVLKKKV IGELINTCYR
RLGIKDTVIF ADQLMYTGFR MATRAGISFG AGDMVTPLEK EGILARSEDE VKAIQAQYTS
GLVTEGERYN KVVDIWSRAT DEVAKAMMDR VSKDTVYLPD GSSVQQDSFN SIFMMADSGA
RGSAAQIRQL AGMRGLMAKP DGSIIETPIT ANFREGLNVL QYFISTHGAR KGLADTALKT
ANSGYLTRRL VDVTQDLVVV ETDCGSEEGL PMTSLVEGGE IIEPLRDRVL GRVVAEDVVH
PNTGEIVIPR NTLLTERHLS QLDELGVDAL KVRSPLTCRS RHGVCALCYG RDLARGHLVN
AGEAVGVIAA QSIGEPGTQL TMRTFHIGGA ASRSAAQSSI DIKQGGVFRY QPNLRLVTHS
SGRHVVVGRN GEVTVTDEQG REKERYKVPY GATILVDDNA AVTAGRRVAE WDPHTRPIVS
EVGGKISLKD AVEGASVAIQ TDEITGLSTL VVIDAKQRPP QGRDLRPVIS LLDEHGQDLK
LPGTDLPARY FLPAKAIIAV HEGMEIHPGD ILARLPVGTT KTRDITGGLP RVAELFEARR
PKDFAVIAEH EGIIGFGKDT KGKQRLIITD ESGEQHEYLI PKGRHVTVYE GERVSPGEQL
VEGQPVPHDI LRVLGVQALA NYIVDEVQDV YRLQGVRIND KHIEVILRQM LRRVEVTSSG
DSTFIPGDQV DRARVEDENI ALEAAGKELP RFTPMLLGIT KASLSTESFI SAASFQETTR
VLTEAAVSGK VDDLRGLKEN VIVGRLIPAG TGLAYHEHRR RLNRGEPVLS LETAVPRDMP
VSVSDTP
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