| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lferr_0490 |
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| Symbol | |
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| ID | 6876446 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011206 |
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| Strand | + |
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| Start bp | 458494 |
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| End bp | 462582 |
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| Gene Length | 4089 bp |
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| Protein Length | 1362 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 642788367 |
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| Product | DNA-directed RNA polymerase, beta subunit |
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| Protein accession | YP_002218951 |
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| Protein GI | 198282630 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0000121478 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCCTACT CTTTTACTGA AAAGAAACGG ATTCGTAAAG ACTTTGGCAA AAGCCAGAGC
ATTCTTGCTG TGCCATATCT GCTGGCTACG CAGATGGATT CCTACCGGGA GTTTCTCCAG
GAGTCGGTAC CCCCGGCGGC GCGAAAGGAA ACGGGTTTAG AAGCTGTTTT CCGTTCGGTT
TTTCCGATGG AAAGTTATTC CGGCAATGCA ATGCTGGATT ATGTCTCCTA CCGCCTGGAA
AAACCGGTGT TTGATGTGGT GGAGTGCCGC CAGCGCGGGC TGACCTACTG TGCCGGTTTG
CGGGTACGTT TGCGTCTGGC GGTTATGGAA AAAGACGACA CCACTGGCGC CAAAAGAGTC
AAAGACGTGA AGGAGCAGGA CGTCTATATG GGCGAACTGC CTCTGATGAC GGAGCACGGT
TCCTTCGTGA TTAACGGCAC GGAGCGCGTC ATCGTCTCGC AGTTGCATCG TTCGCCGGGC
GTTTTCTTCG ATCATGATCG CGGCAAGACC CATTCTTCGG GAAAGCTCCT CTTTAATGCG
CGCATCATTC CTTACCGGGG TTCTTGGCTG GATTTCGAGT TTGACCCCAA GGATCACGTT
TATGCGCGCA TCGATCGCCG TCGTAAGTTG CCGGCGACGA CGTTGCTGCG TGCGCTGGGC
TACAGCACCC AGGACATTCT TGAGATGTTT TTTGATATGG AGACCTTTCG CCTGATCGAC
GGCGATCTGC GCTATGTACT GATCCCGCAG CGTCTACAGG GCGAAGTGGC GGCGTTTGAT
ATCGTCAGTC CGGAAACTGG CGACGTGCTG GTACAGGCCG GTAAGCGAAT TACGGTGCGC
CAAACCAAGG CGCTCTCCGA GGTTCAGGGT CTGCATGAGA TTCCTGTGCC GGATAGCTTC
CTTCTGGGCA AGGTCGTCGC CCGGGATATC GTTCATCCCG AAACCGGCGA AGTGGTGGTA
CAGGCCAATG AGCCCGTCAG CGGTGAGCTT CTGGACGCTC TGCGAAAAAT GCCGTCACTC
ACACTGCATA CGCTCTATCT CAACGAACTG GATCGTGGGC CTTATATTTC AGAAACGTTG
CGTATCGACA CGTCACGTGA TGCTCACGAC GCCCAGATGG AAATCTATCG GCTGATGCGT
CCGGGTGAAC CGCCGACGAA GGATGCGGCG CAAAACCTGT TCCAGGGACT GTTCTTCAGT
CCCGATCGCT ACGACCTGTC GGCCGTAGGC CGCATGAAGT TCAATCGTCG GGTGGGGCGC
GATGAGATCA CCGGTCCTGG CGTGCTGAAT GATGCGGATA TCATCGCGGT GCTCAAGGTA
CTGGTCGCCC TGCGTAACGG TGTGGGGGAG ATCGACGATA TCGATCATCT CGGTAATCGG
CGCGTGCGCT CGGTTGGTGA GTTGATGGAA AACCAATTTC GGCTCGGTCT GGTGCGTGTG
GAAAGGGCCG TCAAGGACCG TCTTGCCCTC GCCGAGAGCG AGGGCCTCAC GCCCCAGGAT
CTGATCAATG CAAAACCCAT TGCGGCAGTG GTCAATGAGT TCTTTGGCTC CAGCCAGCTT
TCCCAGTTCA TGGATCAGAC CAACCCGCTT TCCGAGGTCA CCCACAAGCG GCGTGTCTCG
GCTTTGGGGC CGGGCGGCCT GACCCGGGAG CGTGCGGGTT TCGAGGTGCG TGACGTACAT
CCGACGCACT ACGGCCGGAT CTGCCCCATT GAAACGCCGG AAGGCCCGAA TATCGGACTG
ATCAACAGCT TGTCGTGCTA CGCGCGGACG AATTCCTACG GGTTTCTCGA AACGCCGTAT
CGACGCGTTG TCGATCGCCG CACCACCGAT GAGGTGGAAT ACCTGTCGGC TATTGAAGAA
GGCAATTATA TGATTGCCCA GGCGAACTCG ACGGTGGACG AGCACGGCGT GCTCACCGAC
GAACTGGTGT CCTGCCGTTT CAAGAACGAG TTCACTCTGG CAAACCCGGA TCAGGTTCAG
TTCATGGATA TCTCGCCGCG GCAGATCGTC TCGGTGGCGG CGAGTATGAT CCCGTTCCTG
GAGCATGATG ACGCCAACCG CGCCCTCATG GGTTCCAACA TGCAACGCCA GGCGGTGCCG
ACGGTGCGTT CCGATGCACC GATGGTGGGT ACGGGCATGG AACGGGTGGT CGCCATCGAT
TCTGGTGCGG CCGTCGTCGC CCGGCGTGGT GGCGTGGTGG ATATCGTTGA TGGTGCCCGT
ATCGTCATTC GTGTCAGTGA TGAGGAAACC CTGCCGGAAG AGCCCGGCGT GGATATCTAC
AACCTCGTCA AGTACGCGCG TTCCAACCAG AACACCACCC TGAATCAGCG CCCCGTGGTC
AAGGTCGGCG ATGTGGTGAG TCGTGGTGAC GTACTGGCCG ACGGGCCGAG CACGGAGATG
GGTGAACTGG CGCTCGGCCA GAACATTCTG GTCGCCTTTA TGCCCTGGAA TGGCTATAAC
TTCGAGGATT CCATCCTGAT CTCGGAACGG GTCGTGGCGG AAGACCGCTA TACCACTATT
CATATCGAGG AGTTTTCGGT TTTCGCCCGC GACACCAAAC TGGGGCCGGA AGAAATCACC
CGGGATATCC CCAACGTCGC CGAAGGTGCC TTACGTCATC TGGATGAGTC GGGTATTGTC
GTAATCGGTG CGGAACTGGC GCCGGGTGAC ATTCTTGTCG GCAAGGTCAC GCCCAAGGGC
GAGACGCAGT TGACGCCGGA AGAGAAGCTT CTGCGGGCAA TCTTCGGTGA AAAGGCCTCC
GACGTGAAAG ATAACTCCAT GCGAATGCCT GCCGGTATGT ATGGCACGGT GATCGATGTG
CAGGTCTTTA CCCGCGATGG TATCGAGAAG GATGCCCGTG CCAAGTCCAT TGAAGAACAT
GAACTCGCAC GGATCCGTAA GGATCTTAAT GATCAGTATC GCATCGTCGA GGAAGACAGC
TATCAGCGGA TTGAGCGTCA GCTGATCGGC AAGGTTGCCG AGGGCGGTCC CAACGGCCTG
GCGGCCGGAA ACAAGGTGAC AAAGGCTTAT CTGAAAGACT TACCGCGTGC TAAATGGTTT
GAGATCCGTT TGCGTACGGA AGAGAGTAAC GAGTCCCTGG AACAGATCCG TGCTCAGCTC
GAGGAACAAC GCCAGCGTCT CGATGCGGTA CTCGAAGAAA AGCGGCGCAA GCTGACCCAG
GGGGATGATC TGAGTCCGGG CGTTCTGAAG ATGGTTAAAG TGCATGTGGC CATAAAAAGG
CACTTGCAGC CCGGTGATAA AATGGCAGGC CGCCATGGGA ATAAGGGCGT GGTCTCCAAG
ATCGTGCCAG TGGAAGACAT GCCCTATCTT GCCGATGGTA CGGCGGTGGA TATCGTGCTC
AATCCTCTGG GTGTGCCTTC CCGTATGAAC GTGGGACAGA TCCTCGAAAC CCATCTGGGG
TGGGCTGCCA AGGGGCTGGG CAAGAAGATC GGCGCGATGC TGGACAGTGA GGTGGCAATG
GCAGAAATGC GCGCTTTCCT GGCGGAAATC TACAACCGGT CTGGCAAGAA AGAGGATCTC
GACAGCCTGA CAGACCAGGA AATTCGCGAG CTTTCCGCGA ATCTTCGTGG TGGTGTGCCC
ATGGCGACCC CGGTCTTTGA TGGCGCCTCC GAAGAAGAGA TCGGCGACAT GCTGGAGCTG
GCTGGTTTGC CGCGCAGCGG CCAGGTCACG CTGTATGACG GACGGAGCGG TGATGCTTTT
GACCGCCCGG TGACGGTGGG TTATCTCTAC ATGCTCAAGC TCCATCACCT GGTGGATGAC
AAGATGCATG CCCGTTCCAC AGGTCCGTAC AGTCTGGTTA CCCAACAGCC TTTAGGTGGT
AAGGCGCAGT TTGGCGGCCA GCGCTTCGGT GAAATGGAGG TGTGGGCGTT GGAAGCCTAT
GGCGCGGCAT ACACCCTGCA GGAAATGCTC ACCGTGAAGT CGGATGACGT AAGCGGGCGC
AGCAAGATGT ATGAGTCCAT CGTCAAGGGT GATTTCCGCA TGGATGCCGG AATGCCGGAG
TCTTTCAACG TGTTGTTGAA AGAACTGCGT TCTTTGGGTA TCGATATTGA ACTGGAACAG
TCCAAGTAA
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| Protein sequence | MAYSFTEKKR IRKDFGKSQS ILAVPYLLAT QMDSYREFLQ ESVPPAARKE TGLEAVFRSV
FPMESYSGNA MLDYVSYRLE KPVFDVVECR QRGLTYCAGL RVRLRLAVME KDDTTGAKRV
KDVKEQDVYM GELPLMTEHG SFVINGTERV IVSQLHRSPG VFFDHDRGKT HSSGKLLFNA
RIIPYRGSWL DFEFDPKDHV YARIDRRRKL PATTLLRALG YSTQDILEMF FDMETFRLID
GDLRYVLIPQ RLQGEVAAFD IVSPETGDVL VQAGKRITVR QTKALSEVQG LHEIPVPDSF
LLGKVVARDI VHPETGEVVV QANEPVSGEL LDALRKMPSL TLHTLYLNEL DRGPYISETL
RIDTSRDAHD AQMEIYRLMR PGEPPTKDAA QNLFQGLFFS PDRYDLSAVG RMKFNRRVGR
DEITGPGVLN DADIIAVLKV LVALRNGVGE IDDIDHLGNR RVRSVGELME NQFRLGLVRV
ERAVKDRLAL AESEGLTPQD LINAKPIAAV VNEFFGSSQL SQFMDQTNPL SEVTHKRRVS
ALGPGGLTRE RAGFEVRDVH PTHYGRICPI ETPEGPNIGL INSLSCYART NSYGFLETPY
RRVVDRRTTD EVEYLSAIEE GNYMIAQANS TVDEHGVLTD ELVSCRFKNE FTLANPDQVQ
FMDISPRQIV SVAASMIPFL EHDDANRALM GSNMQRQAVP TVRSDAPMVG TGMERVVAID
SGAAVVARRG GVVDIVDGAR IVIRVSDEET LPEEPGVDIY NLVKYARSNQ NTTLNQRPVV
KVGDVVSRGD VLADGPSTEM GELALGQNIL VAFMPWNGYN FEDSILISER VVAEDRYTTI
HIEEFSVFAR DTKLGPEEIT RDIPNVAEGA LRHLDESGIV VIGAELAPGD ILVGKVTPKG
ETQLTPEEKL LRAIFGEKAS DVKDNSMRMP AGMYGTVIDV QVFTRDGIEK DARAKSIEEH
ELARIRKDLN DQYRIVEEDS YQRIERQLIG KVAEGGPNGL AAGNKVTKAY LKDLPRAKWF
EIRLRTEESN ESLEQIRAQL EEQRQRLDAV LEEKRRKLTQ GDDLSPGVLK MVKVHVAIKR
HLQPGDKMAG RHGNKGVVSK IVPVEDMPYL ADGTAVDIVL NPLGVPSRMN VGQILETHLG
WAAKGLGKKI GAMLDSEVAM AEMRAFLAEI YNRSGKKEDL DSLTDQEIRE LSANLRGGVP
MATPVFDGAS EEEIGDMLEL AGLPRSGQVT LYDGRSGDAF DRPVTVGYLY MLKLHHLVDD
KMHARSTGPY SLVTQQPLGG KAQFGGQRFG EMEVWALEAY GAAYTLQEML TVKSDDVSGR
SKMYESIVKG DFRMDAGMPE SFNVLLKELR SLGIDIELEQ SK
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