| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lferr_0487 |
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| Symbol | rplA |
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| ID | 6876443 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011206 |
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| Strand | + |
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| Start bp | 456597 |
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| End bp | 457289 |
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| Gene Length | 693 bp |
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| Protein Length | 230 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 642788364 |
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| Product | 50S ribosomal protein L1 |
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| Protein accession | YP_002218948 |
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| Protein GI | 198282627 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0081] Ribosomal protein L1 |
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| TIGRFAM ID | [TIGR01169] ribosomal protein L1, bacterial/chloroplast |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.0570658 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.00000155612 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGGCGACGA AATCCAAACG CACACTTGCC ATCAGGGCGA TGGTGGATCG GAATAACCGT
TATGCGATCG AGGAAGCCCT CGAACTCGTC AAGAAGATGG CCACGACCAA GTTCGACGAG
TCGGTGGATG TGGCGGTGGG TCTGGGTATT GATCCGCGCA AATCGGACCA GGTGGTGCGT
GGTGCGGTAG TGCTGCCCCA TGGCACCGGT AAGCAAATGC GGGTGGCCGT TTTCGCCACC
GCCGATAAAG CGACCGAAGC GCGTGAAGCC GGTGCCGATA TTGTCGGTAT GGAGGATCTT
GCGGAGTTGG TGAAGGCTGG GCAGATGGAC TTTGACGTGG TCATTGCTAC GCCGGATGCC
ATGCGTGTGG TGGGCACCCT GGGTCCCGTG CTGGGTCCCC GTGGTTTGAT GCCGAATCCC
AAAGTCGGGA CGGTGACTGC AGATGTTCGT ACTGCCGTAA TCAATGCCAA GGGTGGACAG
GTGCGTTACC GCGCCGACAA AGGCGGCATC GTGCACAGTA CCATCGGCAA GTCTTCCTTT
GAGGTGAAGG CGTTGCAGGA AAACCTGCTG GTGCTGATCG ACAGCTTGCG TAAAGCCAAA
CCGGCCACCA GTAAAGGTAT ATATATCCGT AAGGTGAACC TCTCTCCGAC CATGGGTCCT
GGCGTTGCCG TGGATCTGAG TGGTCTCGGC TAA
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| Protein sequence | MATKSKRTLA IRAMVDRNNR YAIEEALELV KKMATTKFDE SVDVAVGLGI DPRKSDQVVR
GAVVLPHGTG KQMRVAVFAT ADKATEAREA GADIVGMEDL AELVKAGQMD FDVVIATPDA
MRVVGTLGPV LGPRGLMPNP KVGTVTADVR TAVINAKGGQ VRYRADKGGI VHSTIGKSSF
EVKALQENLL VLIDSLRKAK PATSKGIYIR KVNLSPTMGP GVAVDLSGLG
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