| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lferr_0479 |
|---|
| Symbol | |
|---|
| ID | 6876431 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011206 |
|---|
| Strand | + |
|---|
| Start bp | 449878 |
|---|
| End bp | 450450 |
|---|
| Gene Length | 573 bp |
|---|
| Protein Length | 190 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 642788352 |
|---|
| Product | Sel1 domain protein repeat-containing protein |
|---|
| Protein accession | YP_002218940 |
|---|
| Protein GI | 198282619 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0790] FOG: TPR repeat, SEL1 subfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.0237479 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.0000406218 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCGCAATT ATCACGATTT CAGTAAACGA TTCCTTCCTG CTGTCTGTGG GGCAGTATTT
TTGGCGCTTT CCGCGCCTTG GGCGGATGCG CATACCGCAA CCGGTGTAGC CCCCCAAGAT
GTGGCTGGCG CTCACTCTGC CGATCTCACC ACGGCCAGGC TCGAGAATAC GATAGGTACT
CGTTGTGCAT TGGGTGACGG GGTTCCGCAA AATTATAGCT TGGCTGCACA TTGGTTCAAC
AAGGCTGCCC TCCATGGCTA TGCCAAAGCG GAATACAACC TTGGCATGCA GTATTATTTC
GGCCAGGGCG TGAACAAGGA TGAAGCCAAA GCAGCTTACT GGTGGAAGAA GGCGGCAGCG
CAGGGTATTC CCGCCGCTCA GTACAACCTG GGCAATCTCT ATTTCCTGGG GCAGGGGGTG
CCGCAGGACT ATGGCCAGGC CAGCCTCTGG TGGCGCAAAG CAGCAGCGCT TGGCAATGTT
CAAGCCAGCC GTAACCTGGC GACTTTAGCG CAAGTACACC CAGAGTACCG GGAGGTGGCT
GCTGTTAGGG AAAAGACGGT AGTTGCACCA TGA
|
|---|
| Protein sequence | MRNYHDFSKR FLPAVCGAVF LALSAPWADA HTATGVAPQD VAGAHSADLT TARLENTIGT
RCALGDGVPQ NYSLAAHWFN KAALHGYAKA EYNLGMQYYF GQGVNKDEAK AAYWWKKAAA
QGIPAAQYNL GNLYFLGQGV PQDYGQASLW WRKAAALGNV QASRNLATLA QVHPEYREVA
AVREKTVVAP
|
|---|
| |