| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lferr_0473 |
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| Symbol | |
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| ID | 6876425 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011206 |
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| Strand | + |
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| Start bp | 445532 |
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| End bp | 446605 |
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| Gene Length | 1074 bp |
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| Protein Length | 357 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642788346 |
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| Product | riboflavin biosynthesis protein RibD |
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| Protein accession | YP_002218934 |
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| Protein GI | 198282613 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0117] Pyrimidine deaminase
[COG1985] Pyrimidine reductase, riboflavin biosynthesis |
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| TIGRFAM ID | [TIGR00227] riboflavin-specific deaminase C-terminal domain
[TIGR00326] riboflavin biosynthesis protein RibD |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.000612243 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGTGAGG CTCTGGTGCT TGCGGAACAG GGCCTGTACA GCGCGCACCC CAATCCCTGT
GTTGGGGCTG TTCTGGTGAA AGATGGACGC GTCATCGGGC GGGGTGCTCA TCTGCAAGCC
GGTGAGCCGC ATGCGGAGGT TCTCGCGCTG AAGGAGGCGG GTGCTGCTGC GCGCGGCGCT
ACGGCTTATG TGACTCTGGA GCCTTGCAGT CACTATGGCC GTACGCCGCC CTGTGCAGAT
GCGCTGATTG CCGCGGGTAT CGCGCGGGTG GTGATTGCCA TGCGCGACCC CAACCCTCTG
GTGGCGGGGC GCGGCGTGGA ACGTCTGCGC GCCGCCGGCG TGGTGGCCGA GGAGGGTTGC
CTGGAAGCGG CGGCAGAAGC CTTGAATCCT GGATTTCTGC GACGGATGCG CCACGGCCGC
CCCTGGCTGC GGCTCAAGCA GGCCATGAGT CTGGATGGCC GGGTGGCGCT CGCCAACGGG
CGAAGCCAAT GGCTGACGGG GGAGGCGGCG CGTGCGGATG TGCAGCAGGA GCGGGCGCGC
GCCAGTGCCA TCCTTGTCGG CATCGGCACG GTGCTGGCCG ATAATCCGCG CCTCGCACCA
CGCCTGGAAG CTCCCCTGCG GCGCTATCCG GTGAAAGTCA TCATGGACAG CCATCTGCGC
ACGCCGCCGG ATGCGGCGCT TTTTGGTACA CCTGGTGCGG TATGGATTTT TCATGGGCAG
GATGCTCCTG TTGCCGCCCG GGCGGCGCTA TGCGCTGCCG GTGCGGAGTT GCTGTTCTGT
CGCGGCACGG TACAGGGACT GGACTGGCAG GAAGTGATGG GCATGCTGGC AGAGCGGCAG
ATCAACGAGG TGCTGGTCGA AGCGGGGCCT GGCGTCGCTG CTTCCCTGTT CGCCGCTGGC
CTGATCGACG AATGGCTGCT TTATGTGGCC CCGCTGCTGC TCGGGCTGGA TGCACGGCCA
GTGCTCGCCA CCGGCCCCTA TTCGGATCTC GCGGAGGTGC CGCGCTGGTC GGTGATCCAA
AGCTCCCGAT TGGGCAACGA TATCAAGTGG ACATTGCGTC CACAGGAGCG ATAG
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| Protein sequence | MSEALVLAEQ GLYSAHPNPC VGAVLVKDGR VIGRGAHLQA GEPHAEVLAL KEAGAAARGA
TAYVTLEPCS HYGRTPPCAD ALIAAGIARV VIAMRDPNPL VAGRGVERLR AAGVVAEEGC
LEAAAEALNP GFLRRMRHGR PWLRLKQAMS LDGRVALANG RSQWLTGEAA RADVQQERAR
ASAILVGIGT VLADNPRLAP RLEAPLRRYP VKVIMDSHLR TPPDAALFGT PGAVWIFHGQ
DAPVAARAAL CAAGAELLFC RGTVQGLDWQ EVMGMLAERQ INEVLVEAGP GVAASLFAAG
LIDEWLLYVA PLLLGLDARP VLATGPYSDL AEVPRWSVIQ SSRLGNDIKW TLRPQER
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