| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lferr_0415 |
|---|
| Symbol | |
|---|
| ID | 6876367 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011206 |
|---|
| Strand | - |
|---|
| Start bp | 394665 |
|---|
| End bp | 395822 |
|---|
| Gene Length | 1158 bp |
|---|
| Protein Length | 385 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 642788288 |
|---|
| Product | aminotransferase class I and II |
|---|
| Protein accession | YP_002218876 |
|---|
| Protein GI | 198282555 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1168] Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.671912 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.000132671 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGCGG AACGGGGCGG CGCCGACTTC GACAGGGTCA TTCCACGACG CGGAACCGGA
TGCCTCAAAT GGGATGGTGC GGCAGAACGT TTTGGCGCCG AAGTGCTGCC CATGTGGGTG
GCGGACATGG ATTTCGCCGC ACCCGACGCG GTCATCGCCG CTTTGCAGGA ACGCCTGAAT
CATCCCGTTT TCGGTTATCC GGGCAATGAA GGGACCATGT TGCAGGCCGC CGCCGATTGG
CTGGCCAGAC GCCATGACTG GCGGCCGGAA AACGACGCGA TCGCCTGCAT CAGCGGTGTC
GTTCCCGCCC TTTACGCAGC CGTACGTGCC TTCACCCGAC CGGGCGAGGC GATCATCGTC
ATGCCTCCCA TTTATCCGCC GTTCATGACT GCAGTGGAGG ACAACGGGCG GGAATTGCTG
CTGGCTCCGC TGATCGCGGA TGACACCGGC CATTACCGCA TGAACTGGGA TGCCCTGGAA
ATCGCCGTCC AGCGGGCCAA ACTGTTGCTC CTCTGCTCGC CCCACAACCC GGTGGGGCGA
GTCTGGACAG CGGAAGAACT GCAACGACTG GGCACACTTT GCGCCGATGC CGGCTGCGTG
GTGGTCAGCG ATGAAATCCA TGCCGACCTC AGTCAGCATC CGCACTGCCC TTTCCCCAGT
CGCTTCCCAC GCTCGATCCT CCTGACCTCT GCCGGCAAAA GCTTCAATCT GGCGGGACTG
GGTGGCGGGG TCAGCGTTAT CCCCGACGCC GGGCTGCGTC GCACCTTTCT GACTGAAGTC
CGGCGCAGTC AGATTCAGCA CACCAACCTC TTCGCCCTGA CCGCCATGAC CTGCGCCTGG
CACCGCGGCG CAGAATGGCA GTCCGCATTG CGCGGTTATC TGGCGGACAA CGCCCGTTTC
ATCAGCGAAT ACCTGGTGCG GGAGCTACCC GAGGTCGGCT ATCGGCAACC GGAGTTCGGG
TACCTCGCCT GGCTGGACGT GCATCATTAC GGCAACGATG AGACGCTGGC GCGGCGTCTG
CTGCAAGCGG GTCTTGGCCT CAATCCCGGC CCCAGTTTCG GATCGGGCGG CGAGGGTTTC
GTGCGACTGA ACTTTGCCAC CCCCCGAAGC ATGCTGGAAG AAGGGCTGGG GCGGTTGCGA
CAGGCCTTGC ACCGCTAG
|
|---|
| Protein sequence | MSAERGGADF DRVIPRRGTG CLKWDGAAER FGAEVLPMWV ADMDFAAPDA VIAALQERLN
HPVFGYPGNE GTMLQAAADW LARRHDWRPE NDAIACISGV VPALYAAVRA FTRPGEAIIV
MPPIYPPFMT AVEDNGRELL LAPLIADDTG HYRMNWDALE IAVQRAKLLL LCSPHNPVGR
VWTAEELQRL GTLCADAGCV VVSDEIHADL SQHPHCPFPS RFPRSILLTS AGKSFNLAGL
GGGVSVIPDA GLRRTFLTEV RRSQIQHTNL FALTAMTCAW HRGAEWQSAL RGYLADNARF
ISEYLVRELP EVGYRQPEFG YLAWLDVHHY GNDETLARRL LQAGLGLNPG PSFGSGGEGF
VRLNFATPRS MLEEGLGRLR QALHR
|
|---|
| |