Gene Lferr_0408 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLferr_0408 
Symbol 
ID6876360 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidithiobacillus ferrooxidans ATCC 53993 
KingdomBacteria 
Replicon accessionNC_011206 
Strand
Start bp387654 
End bp388877 
Gene Length1224 bp 
Protein Length407 aa 
Translation table11 
GC content49% 
IMG OID642788281 
ProductO-antigen polymerase 
Protein accessionYP_002218869 
Protein GI198282548 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.00264178 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAAAGCAC TTTTACAAAA AACCATGTTC CTGTTTTTTT GTCTGCCGAT TTTTTTCTTT 
CCGTTAAGTA CCGCGGCAGC GGGTATTAGT GGCGGTATCT TCGTACTGCT ATATATCATG
AGCGGGTACT GGAAAAACTT GGGGCAGATA CCGACGCGCC CATGGTTCAT ACCGCTGACC
CTGTTGATAT TATGGACGTT GCTAGGCACC ATTTGGAGCA GAGCGAACCC TCACGATACC
TGGATAGCCA TAAGTCGACT CGGATATTTC TTTTTTGCGT ACGCAGGAAC AACACTGCCT
TGGAACAGAA GCAGGTTCCG GATGATTCCG GGTTTATTTC TGGCGGGATT GATATTGAAC
TGGATAGTCG GCCTATGTCA GTGGCTTGGA ATATGGAAAT GGAGTCCGTT GATTCCGAGG
CTTGGCCCTG TCGGTTATGC CAATCATATT TTTCTCAGCA TGACGCTGAC CATGGCATTG
CTATGGATAG CCTACGATAT GCGGGATAGG GTTTTGTTAC CGAGATGGGC AAACGCAATT
CTCGCGGTAG CCTTCCTGCT GCAATTGGGC ATGGGTGCCG GACGTACTGG TCAGTTGCTT
TTCGTCATCC TCATGCCGCT TGCGGTATGG GTGTTATTCA GGGGGCAGTG GCGTTATTGG
GCGTTGGGAG GTATTGCGCT GACAATAATT GGGATGGGAA TGTCTCCCAT TGTTCAACAT
CGAGTGCAAG AAGGATTGCA AAATTTACAA GTTGTCAGCA AGGGTGATTA CGATACCAGT
TGGGGACTGC GTGTTTTGAT GGCCCAGGGC GCACTGTACA TGGGTTTCCA GCATCCTATC
CTGGGGGTTG GTACAGGCAA TTACGCAAAC GAGATGGCAC AATTACAGAA AAATCATATT
CTACCTGAGC TGCCATCTCC GTTGATCATG AGCCAGCCTC AAAACAGTTA TCTCCTTGAA
CTGGCCATGC TAGGCATTCC CGGTCTGTTG CTGCTAGTGT GGTTCTTGTG GGCTGTAACG
GCACCAGCAT GGCGACTGAA GGCGGTTCCC GAAGGCTGGT TTGTTTTAAT TTATATGGCG
GTATTTATAG CTGGTAGTTT TTCTGACACA TTGATTTGGG GGTATGCCAA TGTGTTCTCG
CTGGCGATAC TGACCGCCTT GCCAATCCCC CTTGCCCAGG ATGGCTTACA TGGCGCGACT
ACCACTGACA ATCGCTTCGC GTAG
 
Protein sequence
MKALLQKTMF LFFCLPIFFF PLSTAAAGIS GGIFVLLYIM SGYWKNLGQI PTRPWFIPLT 
LLILWTLLGT IWSRANPHDT WIAISRLGYF FFAYAGTTLP WNRSRFRMIP GLFLAGLILN
WIVGLCQWLG IWKWSPLIPR LGPVGYANHI FLSMTLTMAL LWIAYDMRDR VLLPRWANAI
LAVAFLLQLG MGAGRTGQLL FVILMPLAVW VLFRGQWRYW ALGGIALTII GMGMSPIVQH
RVQEGLQNLQ VVSKGDYDTS WGLRVLMAQG ALYMGFQHPI LGVGTGNYAN EMAQLQKNHI
LPELPSPLIM SQPQNSYLLE LAMLGIPGLL LLVWFLWAVT APAWRLKAVP EGWFVLIYMA
VFIAGSFSDT LIWGYANVFS LAILTALPIP LAQDGLHGAT TTDNRFA