| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lferr_0326 |
|---|
| Symbol | |
|---|
| ID | 6876277 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011206 |
|---|
| Strand | + |
|---|
| Start bp | 309036 |
|---|
| End bp | 310280 |
|---|
| Gene Length | 1245 bp |
|---|
| Protein Length | 414 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 642788199 |
|---|
| Product | integrase family protein |
|---|
| Protein accession | YP_002218787 |
|---|
| Protein GI | 198282466 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4974] Site-specific recombinase XerD |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.061717 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGGAAG TACTTATCAA GCGCCCCACT ACGTTGGCGC GTTATCTGGG GGCTCCGCTC
GCAGAAGAGA GGGATAATTT TCTCAAACAC TGTGCGCAGG TAGGTTACTC GCCCTCCATG
CTCAAGAAGA TTTCTTGGGT GATCTGGGCT GTCGCAGAGT ACATTGGCAT TGATCATGGC
AAGGTGACTA TGCAAGACAT TAGGATTGCT GTAGATCACC GGACGCGCTT TAAACGCCAA
TCAACCCAGA CCAAGGAATC GAAGAGCACT CGCCAGATGT TTATCCATTT CGCGACGGAA
TGGGCGCGAC ATATGGGTTG TCTTGGACAA GCTGCGAAAC CTCAGGATAG TTTCGCGGTA
CAAATAGGGA TTTTTGCTCG CCACATGCGC GAAGAACGGG GACTATCTCC CGTGACTATT
GCAACCCGTT GTGAACGGCT TGGCTGGTTT TTCGCCGGAT TAAATCCGCC ACGAGGCACG
CTGGATGCAA TCACCATTTG CGATCTCGAT GCCTTCGTCG AACTGAAGGG CCAACAAGGC
TGGACGCGCG CCTCACTGGG CTCATTGGCC AGCTCCTTAC GCAGCTTTTT TGCTTTTGCT
GAAGCTCGCG GCTGGTGTGC CAAAGGGTTA ACGGCGACCA TTGAATCGCC GCGACTATAT
ACCCGCGAGG GAATCCCGGA GGGCCCGGGT TGGGAAGATG TACAGCGTCT CTTGGTCAGT
ACTGCTGGCG ATCATCCTGT AGATATTCGC GATCGCGCCA TTTTGATGTT GCTGGCATTG
TACGGATTGC GCCGTGGCGA GGTCGCAGCA CTTCAACTCG AGCATTTGGA TTGGGACGGG
GATAAAATTT GCGTGGTACG ACCTAAACAG CGCATCGCTC AGCGTTATCC CTTACTGCCC
AGTGTGGGCG AAGCCATTGT GCGCTATCTG CGCGATGTAC GTCCTCAGTG TGAACATCGG
GCGTTATTCC TCACGATCGG TGCCCCCATG CGCCCACTTT CGGCGGAGAG TATCTCGCAT
GTCGCCCGCG CACGCTTAAA CCAGCTTGGT CTCACGCTCT CTCCTCGCGG GGCGCACTGC
CTGCGTCACG CCTGTGCCAG TCATCTCCTC TCTTCGGGTT TTTCACTAAA GCAAATTGGT
GATCACCTTG GTCATCGCAA CGCCAATTCG GCGCTGAGCT ATACCAAGGT TGATCTGACG
GGGTTGCGAC AGGTCGCCGA ATTCGACTTG GGGGGTTTAC TGTGA
|
|---|
| Protein sequence | MMEVLIKRPT TLARYLGAPL AEERDNFLKH CAQVGYSPSM LKKISWVIWA VAEYIGIDHG
KVTMQDIRIA VDHRTRFKRQ STQTKESKST RQMFIHFATE WARHMGCLGQ AAKPQDSFAV
QIGIFARHMR EERGLSPVTI ATRCERLGWF FAGLNPPRGT LDAITICDLD AFVELKGQQG
WTRASLGSLA SSLRSFFAFA EARGWCAKGL TATIESPRLY TREGIPEGPG WEDVQRLLVS
TAGDHPVDIR DRAILMLLAL YGLRRGEVAA LQLEHLDWDG DKICVVRPKQ RIAQRYPLLP
SVGEAIVRYL RDVRPQCEHR ALFLTIGAPM RPLSAESISH VARARLNQLG LTLSPRGAHC
LRHACASHLL SSGFSLKQIG DHLGHRNANS ALSYTKVDLT GLRQVAEFDL GGLL
|
|---|
| |