Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lferr_0313 |
Symbol | |
ID | 6876263 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
Kingdom | Bacteria |
Replicon accession | NC_011206 |
Strand | - |
Start bp | 298560 |
End bp | 299945 |
Gene Length | 1386 bp |
Protein Length | 461 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 642788185 |
Product | FAD linked oxidase domain protein |
Protein accession | YP_002218774 |
Protein GI | 198282453 |
COG category | [C] Energy production and conversion |
COG ID | [COG0277] FAD/FMN-containing dehydrogenases |
TIGRFAM ID | [TIGR00387] glycolate oxidase, subunit GlcD |
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Plasmid Coverage information |
Num covering plasmid clones | 30 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.0000316331 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGAGCATCA GCACCATCAT TCCCGCCCTG CGCGCCGCTC TCGATGCCGA GCGGGTGCGC GACGATGCGG AAACCCTCGC CATCTATAGC CGCGACGATA CTCCGGGGAG TTGCATACCC GTGATGGTGC TCTTCCCGCA CAGCCATGAG GAGGTGCAGG CGATTGTCAG CATTGCCCGC CGCCATCGTC TGCCCCTTGT TCCGCGCGGA GCAGGTTCCG GGAATGTCGG CGGGGCACAG CCGGTACCCG GCAGCGCCGT CGTCAGCTTT GAGTGCATGC AAAAAATCTG CGATTACAGC GCGGTGGACC GTACCATCAC CGTAGAGGCC GGATGTGTCA CTGCCGCGAT CAGTGCCTAT GTGCAGGCCG ACGGACTGTT TTATCCCCCC GATCCCGGCA GCAACCCCTA CTGCCGCATC GGTGGCAATC TGGCCATGAA TGCCGGCGGG CCGCACGCCG TAAAATATGG CGTCACCCGC GATTACGTAC TGGGCCTGCG TGCTGTCACC GGCACCGGCG AAACGCTGTG CTGCGGTGTT CATACCAGCA AAGGTGTGGT CGGCTATGAC CTGACCCGTC TGCTGGTAGG CAGCGAGGGC ACCCTTGCCC TCATCACCGA GGCCACCCTG CGCCTGCTCC CCCTCCCCTC GGCCCAGGCC ACCCTGCGCG CCGTCTATGA CAATACGGCC AACGCCTGCG CGGCGGTGCA GCGGGTGATG GCACAACACC ATACGCCCAG CGCCCTGGAA CTCATGGACC CCTACGCCCT GGCCGCAGTG CGCGCCATGG GCGCCGCCAG GGATCTGCCC GAAGGCAGCA ACGCCCTGCT GATGGTCGAG GTGGATGGCG AGGCGATCAC CATCCCCGAC CAGGTGCAGG CCATCCGCGC CGCTCTGGCG GGCGAGGGAA GCCTGGAAAT CCTGGAGGCG ACGGACGCGG CGGCCGTCGC CGATCTGTGG GCGGCGCGCA AATCCCTGTC CCCCGCCACC AAGGCCATGG CACCCCTCAA AATCAACGAG GACGTGGTCG TGCCGGTCAG CCGCCTGCGC GAATTGCTGG AGGCCATAGA AGGGATCGCA GCAGAACAGT CCCTGCATAT CGTCAGCTTC GGGCACGCCG GAAACGGCAA CCTGCACGTC AACTTTCTGG TCCATCCCCA AGATGGCAAT GAAATGCGCC GTGCCAGGCA CGGCCTGCAA AAGCTCTTTC AGGCCGTACT GACACTGGAT GGAACCCTCT CCGGCGAACA CGGCATCGGC AGCAGCAAGC GCGCCTATGT CCCCCTGGAA CTGAGCCCGG AAAGCCTGAG CATCCAGCGC GCCATCAAGC GGATCTTCGA CCCTGATGCC ATTCTCAACC CCGGCAAACT GCTCCCCGAG ACCTGA
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Protein sequence | MSISTIIPAL RAALDAERVR DDAETLAIYS RDDTPGSCIP VMVLFPHSHE EVQAIVSIAR RHRLPLVPRG AGSGNVGGAQ PVPGSAVVSF ECMQKICDYS AVDRTITVEA GCVTAAISAY VQADGLFYPP DPGSNPYCRI GGNLAMNAGG PHAVKYGVTR DYVLGLRAVT GTGETLCCGV HTSKGVVGYD LTRLLVGSEG TLALITEATL RLLPLPSAQA TLRAVYDNTA NACAAVQRVM AQHHTPSALE LMDPYALAAV RAMGAARDLP EGSNALLMVE VDGEAITIPD QVQAIRAALA GEGSLEILEA TDAAAVADLW AARKSLSPAT KAMAPLKINE DVVVPVSRLR ELLEAIEGIA AEQSLHIVSF GHAGNGNLHV NFLVHPQDGN EMRRARHGLQ KLFQAVLTLD GTLSGEHGIG SSKRAYVPLE LSPESLSIQR AIKRIFDPDA ILNPGKLLPE T
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