Gene Lferr_0226 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLferr_0226 
Symbol 
ID6876176 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidithiobacillus ferrooxidans ATCC 53993 
KingdomBacteria 
Replicon accessionNC_011206 
Strand
Start bp211285 
End bp213567 
Gene Length2283 bp 
Protein Length760 aa 
Translation table11 
GC content56% 
IMG OID642788102 
Producttype III restriction protein res subunit 
Protein accessionYP_002218691 
Protein GI198282370 
COG category[V] Defense mechanisms 
COG ID[COG4096] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATGAAG CCGACACCCG CGCCCAACTG GTAGATCCCG CCCTCAAGGC CGCTGGCTGG 
GGTGTGGTGG AAGGCAGCCG GGTACTGCGG GAGTACCGGA TCACTCAAGG GCGGTTACAA
GGTGCCGGAC AACGCGGCAA GCCGGAAATT GCCGACTACG TGCTGGAGTA CCGCAACGAA
AAGCTTGCTA TCGTCGAAGC CAAGCGTCTC GACCTGCCCC ATACCGAAGG GGTGATGCAG
GCCAAACAAT ACGCCCTGAA AATGGCCATA CGGTTCACCT ATGCCACCAA CGGAACATCC
ATCTATGGCA TCGACATGGA AATGGGTTCG GAAGGTGAAC TACCCTGTTA TCCCACCCCC
GAAGAGCTCT GGAATCTAAC CCATGTCGTA GAAAACGCTT GGCGGGATCG TTTTGCCGCC
ATTCCATTTG AAAGTGTCGG CGGCTCGTTC CAGCCCCGCT ACTATCAGGA GACCGCCGTA
CAGCGCGTCC TGGAAGCCAT TGCGCAGGGA CAGGAGCGCA TCCTCCTGAC GCTGGCTACC
GGCACGGGCA AAACCTTCAT TGCTTTCCAG ATCGCCTGGA AACTCTTTCA GGCCCGCTGG
AACCTCTCCC GCGAACCCAG CCGCAGGCCG CGTATTCTTT TCCTGGCGGA CAGGAATATC
CTCGCCAATC AGGCTTTCAA TGCCTTCAAC GCTTTTCCCG AAGATGCCCT AGTGCGGATT
GCCCCTGAGG ATATCCGCAA GAAAGGCCGA GTCCCCACCA ACGGCAGTAT ATTTTTCAGC
ATCTTCCAGA CCTTCATGAG TGGCCCCGGT GATACACCGT ACTTCGGGGA CTATCCGCCG
GACTTCTTCG ACTTCATCGT GGTGGATGAA TGTCACCGGG GCGGCGCCAA GGACGAAAGC
AGTTGGCGCG GCATCCTCGA ATACTTTGCG CCTGCGGTAC AGTTGGGCCT CACCGCTACA
CCCAAGCGCC GGGACAACGT GGATACCTAT GCGTACTTTG GCGCGCCGGT CTATATTTAC
AGCCTCAAGG ACGGCATCAA TGACGGTTTT CTGACCCCTT TCAAGGTCAA GCAATTCGCC
ACCACCATCG ACGAATACAT ATACACCCCC GATGATGATC TCCTCGAAGG CGAAATCCAG
CGCGGCAAGA CCTATCTGGA AAAAGACTTC AATCGCAAAA TCGTCATCCC CGAGCGGGAA
CGCTATCGGG TAAAACTCTT CATGAGCCAG ATCGACCAGC GCGAGAAGAC CTTGGTGTTC
TGTGCCAATC AGGAACACGC CGCCATGGTG CGGGACATCA TCAATCAGGA GAAGACCAGC
ACCGACCCCC TCTACTGTGT CCGCGTGACG GCCAATGACG GCAGCATGGG CGATCAGTAT
CTGAAAGACT TCCAGGACAA CGAAAAAAAT ATCCCCACCA TCCTGACCAC CAGCCAAAAG
CTGAGCACCG GCGTCGATGC CCGGAACATT CGCAATATCG TTCTGCTTCG CCAAATCAAC
AGCATGATCG AATTCAAACA GATCATCGGT CGGGGCACCC GGCTGTATGA GGGGAAGGAC
TTTTTCACCG TCTATGACTT CGTGAAGGCG CATCATCATT TCGGTGATCC GGAATGGGAT
GGCGAGCCGC TGGAAGCGGA ATCCACAGGG AGAAGCAGCG AAGTGCGGGA ACCCCGTCTA
CCTCTACCGC CGACCGAGCG GCCCGTCAAA ATCCGGGTGA AGCTGCGGGA TGGGAAGGAG
CGCAGCATCC AGAGCATATC TTCCACCATC TATTTCGGAC CTGATGGAAA TCCCGTTACG
GCAGCGCAGT TTCTGGAAGG GCTCTTTGGC ACACTGCCGG AGTTCTTCAA GGATGAGGAC
GCGCTTCGCC AGATATGGAG CGATCCTGAG ACGCGGAAGA GCTTTCTGCA GGGACTGGCT
GAGAAGGGCT ATAACCGGGA ACTGCTCATG GAGATGCAGC AAATCATCGA CGCGCAGAAT
AGTGATCTCT ATGACGTGCT GGCCTACGTG GCTTTTGCCT TGCAACCGGT TCCCAGATCA
GAGCGGGCTG AACATGCCAA GCAGAGTATG GACCAGCAGT TCACCGACAA ACAGCGGGCC
TTTCTGGACT TTGTGTTGGC GCAGTATGTG AAAGTAGGAG ATGCGGAACT GGATACCGAA
AAATTATCGC CCCTACTCCG GCTGAAGTAC AACAACGCTA TCGCCGATGC GTTTGCGGAG
CTGGGCACAC CGGTACAGGT AAGGGAAGTG TTCAGCGGGT TTCAGCGATA TTTGTATGAA
TGA
 
Protein sequence
MNEADTRAQL VDPALKAAGW GVVEGSRVLR EYRITQGRLQ GAGQRGKPEI ADYVLEYRNE 
KLAIVEAKRL DLPHTEGVMQ AKQYALKMAI RFTYATNGTS IYGIDMEMGS EGELPCYPTP
EELWNLTHVV ENAWRDRFAA IPFESVGGSF QPRYYQETAV QRVLEAIAQG QERILLTLAT
GTGKTFIAFQ IAWKLFQARW NLSREPSRRP RILFLADRNI LANQAFNAFN AFPEDALVRI
APEDIRKKGR VPTNGSIFFS IFQTFMSGPG DTPYFGDYPP DFFDFIVVDE CHRGGAKDES
SWRGILEYFA PAVQLGLTAT PKRRDNVDTY AYFGAPVYIY SLKDGINDGF LTPFKVKQFA
TTIDEYIYTP DDDLLEGEIQ RGKTYLEKDF NRKIVIPERE RYRVKLFMSQ IDQREKTLVF
CANQEHAAMV RDIINQEKTS TDPLYCVRVT ANDGSMGDQY LKDFQDNEKN IPTILTTSQK
LSTGVDARNI RNIVLLRQIN SMIEFKQIIG RGTRLYEGKD FFTVYDFVKA HHHFGDPEWD
GEPLEAESTG RSSEVREPRL PLPPTERPVK IRVKLRDGKE RSIQSISSTI YFGPDGNPVT
AAQFLEGLFG TLPEFFKDED ALRQIWSDPE TRKSFLQGLA EKGYNRELLM EMQQIIDAQN
SDLYDVLAYV AFALQPVPRS ERAEHAKQSM DQQFTDKQRA FLDFVLAQYV KVGDAELDTE
KLSPLLRLKY NNAIADAFAE LGTPVQVREV FSGFQRYLYE