| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lferr_0171 |
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| Symbol | |
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| ID | 6876121 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011206 |
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| Strand | + |
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| Start bp | 160558 |
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| End bp | 161874 |
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| Gene Length | 1317 bp |
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| Protein Length | 438 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 642788048 |
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| Product | efflux transporter, RND family, MFP subunit |
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| Protein accession | YP_002218637 |
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| Protein GI | 198282316 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.538499 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGGCAC GCAACTGGAT CATCGGCATG GGCCTGCTGG GCATTGGTGT AGGTCTGGGG
GCTGGCGCGG TGTGGTGGCT GCGAGTCCCT GCCGCGGCAC CGAGTGCCAA CTCCACCGCA
ACCCATTCTC AGGAAGGCAC GCCAAAGGGA CGGCATATCC TCTACTGGGC CGCCCCCATG
AACCCCAAGA TTCATTCGGA TCACCCAATG AAGGACAGCA TGGGGATGGC GTATCTCCCG
GTCTATGCCT CCAGTCCGAA CGCGCCCAAG GCGTCCGGCC TCAGCATCGA TCCGCGCCTA
GCCCAAAACC TGGGAGTGCG TCTCGTGGAT GTCCAGCGCC GTCCGATGGG TCAGGCCATC
CACACCGTGG GCACCGTGGC AGTGGACGAG AACCGCGTCT ATTCCGTCAA TCCGCGCTTC
TCCGGCTGGG TGACACGCTT GAATGTCCGC GCCGTCGGTG ACCCCGTGCG GCGCGGACAG
GTACTCGCCG AGATTTATTC TCCCGAGCTG TATAGCGCCC AACAGGAATA TCTCATTGCC
CGTCGCCAGG GCGGAACGAC GGAAGACTCG GCTCTGCTGG CGGCAGCCAA GGCGAAATTG
CGACTGCTGG GCATGCCGGA AGGCGAGATC GCGGCCCTGG CCCAGCGCGG GACGGCGCAA
CGGGACGTGC CACTCCTGGC GCCTGCTTCC GGGGTGGTCG AGAGCCTCGA CGTGCGCCAA
GGTGGTTACG TCTCGCCCCA GACGAATATC TATGCAATCG CCAATCTCGA CCGGGTATGG
GTCAATGTAG CGCTCTACTC CTACCAATTG CCCTGGATAC GGATCGGCAA CCCCGTACGC
CTGCATCTGC CAGCCTATCC CGGCAAGGCC TGGGAAGGAC GCCTGAACTT CCTCTACCCG
ACCCTCGACC CCAAAAACCG GACGGTGACG GCCCGGCTGA GTTTTCCCAA TCCGGGCGGG
AACCTGCGCC CCGGCACTTA CGCCACCGCC ACTATTTTAG CCAGCCCCGA GGAGACCCTG
GCGGTACCCA GCAGTGCCGT ACTGCGTACC GCTCAGGGGG ATTACGTGAT GCTGGGTGAG
AGTAACGGGC ATTTTCTGCC GGTGGAGGTC GCTCTGGGGG CGGAGGCCGA CGGCTGGATT
GCCATCGACA AGGGCCTTAA GGCGGGGGAT CGGGTGGTGG AGAGCGCGCA GTTCCTGCTC
TATTCCGAGT CTCAGTTCCA GTCCGTCAAG GCCCGTATGC TGGGGGGCAA CACGGCGCCC
ACCACGAGTG CCACGGCCGG GATGAACATG AGTCAGGGAG GCCAGTCTCA TGATTAG
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| Protein sequence | MKARNWIIGM GLLGIGVGLG AGAVWWLRVP AAAPSANSTA THSQEGTPKG RHILYWAAPM
NPKIHSDHPM KDSMGMAYLP VYASSPNAPK ASGLSIDPRL AQNLGVRLVD VQRRPMGQAI
HTVGTVAVDE NRVYSVNPRF SGWVTRLNVR AVGDPVRRGQ VLAEIYSPEL YSAQQEYLIA
RRQGGTTEDS ALLAAAKAKL RLLGMPEGEI AALAQRGTAQ RDVPLLAPAS GVVESLDVRQ
GGYVSPQTNI YAIANLDRVW VNVALYSYQL PWIRIGNPVR LHLPAYPGKA WEGRLNFLYP
TLDPKNRTVT ARLSFPNPGG NLRPGTYATA TILASPEETL AVPSSAVLRT AQGDYVMLGE
SNGHFLPVEV ALGAEADGWI AIDKGLKAGD RVVESAQFLL YSESQFQSVK ARMLGGNTAP
TTSATAGMNM SQGGQSHD
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