| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lferr_0024 |
|---|
| Symbol | |
|---|
| ID | 6875973 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011206 |
|---|
| Strand | + |
|---|
| Start bp | 25961 |
|---|
| End bp | 28171 |
|---|
| Gene Length | 2211 bp |
|---|
| Protein Length | 736 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 642787903 |
|---|
| Product | integral membrane sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_002218493 |
|---|
| Protein GI | 198282172 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5000] Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.10248 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACCGTC GTACCCCTTC CCCGTTGAAA AACTGGTTGC GTGCCCTGAG CACCGGAACC
ACAGGGGAGC AGCTGCGGGT GGGACCGCGC TGGGACGCCG TTCTGCTCCT GCTCGCCATT
GTGGCCTTTT TGGGGATCAA CTTTTTCACC AGCGCCGGGG GGCCGCTGAG CCATTATTTC
GTGCCCATGC TGGTGATTTC GGCGGGGATC GTCCTCTTTC TGCTCTCCCT GGTACTGATC
TCGGTGGTGG CGCTGCTGTT GCGACTGCGG CGAGGCGAGG TGGGCAGTCA ACTGGCTACC
CGCCTGGTGG TCATCATCAC TCTGCTCAGT TTTTTGCCGG CAGCCGTCGT TTTCGGTTTT
TCCTGGCAGT ATCTGAATCG GGGCGTGGAC TCGTGGTTCA GCAGCGCTGT GCAGAGTGCG
CTGGATCAGG CCCTGAATGT GGCCAAGGCG GGCGTGGATC GCTACCGCAA TTCCACGTTG
CTGGCGGCGG AAAGCATTGC CCAGGCGCTG GTGGGGGAGT CGGACAGCAG CGCCGTAATC
ACCGTGATTG CCCTGCGCGA TCAGTATCGC CTGAGCAGCG TAACCCTTTT CTCCAGCGAC
AACCGGATCA TCGCCACCAG CAGTGATAAC CTCAGTCTGG CCCCGCGTGT GCCGCGCCGG
GAAATTCTCG CCATGGAAGA GGGCCATCCG ACCGCCACCA TCGAGCCGGA ACCCAAGGGC
GGCCTGCTGG TAAAGGTGCT GATCCCGGTG CTGAGCCCAC ACCTGGGGGA AAGCAACCGC
ATGCTTTATG TGGAGCAACC CATCCCCGAG CAACTGACTC GGGCCGCAGA GGCGGTGCAG
GTGGCATATA CCCGGTATCA CCAGTTGATG CTGATGCGCG AACCGATGAA AACGGCCTTT
CAGCTCAGCC TGGCGGTGGC CTTGCTGCTG GCTGTGCTGT CGGCGGTGTG GATGGGTTTG
CATCTGGCGC GACGACTGAC CGCGCCCATC GCGCGTCTGG CGGCGGGAAC CCAGGCGGTG
GCACGTGGGG AGTTCATTCC CTTGCAGACA GTGGCGAGTC ACGACGAGCT GGGCGTCCTG
ATACATTCGT TCAACAATAT GACCCGACAA CTGGCGCGGG CCAAGCAGCA GGCGGCGGCG
GCCCAGGAGC AGGCGGAGCA GCGGCGGTTG TATCTGGAGA CCGTGCTCGG CCAGATTTCC
AGCGGCATCC TGACCTTCGA TGGCGAAAAT CGTTTGGCCG AAGTCAACGC TGCGGCGACC
CATATCCTTC AGGAGGATCT GCTCAGAGGC AGCGCCCTGG AAGGCCTGCA TGACGGCACC
GCGCTGGAAC CCCTGTGGAA ACTGGTGGCG GATTGGGTGG AACATCCTCG TAACGGGATG
CAGAAAGAGT TGCAGATCGA GCGCTCCGAC GGGCCGCAGA CCATTATCGT GCATGGCGCG
CATTTTGCGG ATGACGCCGG TAGTCGGGGT TTCGTCCTGG TTTTCGATGA CATCAGTACG
CTGGTCGCCG CCCAACGCAG CGCCGCCTGG AGTGAAGTGG CGCGGCGTCT GGCCCACGAG
ATCAAGAACC CGCTCACCCC CATTCAGCTC TCCGCCGAGC GGCTGCGGCG CAAATATCTG
GAACGCCTTG GCGACGAGGG GGAGACCCTG GATCGTGCCA CCCGCACCAT CATCCATCAG
GTGGACGCCC TCAAGGTGAT GGTGGATGCC TTCTCGGAGT ACGCCCGGCA GCCGCAACTG
GAGTTGCGCC CGCTCGATCT CAACACGCTG ATTCTGGACG TGCTCGACCT GTATCGTGGG
CAAGAGAGCG GAGTGGAGAT TCGGGCGGAG CTGGGTGCGG GCCTGCCCCC CCTGCGGGCC
GATGTGCATC GCCTGCGCCA AATCCTCAAT AATCTTCTGC GCAATGCCCT TGACGCCTTA
CAGGGTGGCG TAGAATCCAC TGATGGTAAG CATATTCTGA TTCGCACCCG TTTGACGGAC
GCCGGCCCCA CAAAGATGCT AGAGTTGAGT GTGTTGGATG ACGGGCCCGG CTTCCCGGTC
GAGTTGCTGG CGCGGGTTTT TGAGCCCTAC GTCAGCACCA AGGTGAAGGG TTCCGGGCTG
GGTCTCGCCA TCGTCCGGCG TATCGTTGAG GAGCACGGCG GGCAGATTAT CGCCGATAAT
CAGGGTTTGC AGGGCGGTGC GCGTATCGTT ATTGATTTTC CGTTAGGTTG A
|
|---|
| Protein sequence | MDRRTPSPLK NWLRALSTGT TGEQLRVGPR WDAVLLLLAI VAFLGINFFT SAGGPLSHYF
VPMLVISAGI VLFLLSLVLI SVVALLLRLR RGEVGSQLAT RLVVIITLLS FLPAAVVFGF
SWQYLNRGVD SWFSSAVQSA LDQALNVAKA GVDRYRNSTL LAAESIAQAL VGESDSSAVI
TVIALRDQYR LSSVTLFSSD NRIIATSSDN LSLAPRVPRR EILAMEEGHP TATIEPEPKG
GLLVKVLIPV LSPHLGESNR MLYVEQPIPE QLTRAAEAVQ VAYTRYHQLM LMREPMKTAF
QLSLAVALLL AVLSAVWMGL HLARRLTAPI ARLAAGTQAV ARGEFIPLQT VASHDELGVL
IHSFNNMTRQ LARAKQQAAA AQEQAEQRRL YLETVLGQIS SGILTFDGEN RLAEVNAAAT
HILQEDLLRG SALEGLHDGT ALEPLWKLVA DWVEHPRNGM QKELQIERSD GPQTIIVHGA
HFADDAGSRG FVLVFDDIST LVAAQRSAAW SEVARRLAHE IKNPLTPIQL SAERLRRKYL
ERLGDEGETL DRATRTIIHQ VDALKVMVDA FSEYARQPQL ELRPLDLNTL ILDVLDLYRG
QESGVEIRAE LGAGLPPLRA DVHRLRQILN NLLRNALDAL QGGVESTDGK HILIRTRLTD
AGPTKMLELS VLDDGPGFPV ELLARVFEPY VSTKVKGSGL GLAIVRRIVE EHGGQIIADN
QGLQGGARIV IDFPLG
|
|---|
| |