Gene Lferr_0009 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLferr_0009 
Symbol 
ID6875958 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidithiobacillus ferrooxidans ATCC 53993 
KingdomBacteria 
Replicon accessionNC_011206 
Strand
Start bp13869 
End bp14333 
Gene Length465 bp 
Protein Length154 aa 
Translation table11 
GC content58% 
IMG OID642787888 
ProductSpore coat U domain protein 
Protein accessionYP_002218478 
Protein GI198282157 
COG category[S] Function unknown 
COG ID[COG5430] Uncharacterized secreted protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.164066 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.00841458 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAAACGGA AGCTCGCTTT AGCCGCACTG CTGATTTTTG CGCCGACGGC GGTCGATGCG 
GCCTGCAGCG TTACCGCCAC CGGCGTTGCG TTCGGAACCT ATGTGCCGTC CGCCGCCTCG
AATTCCACCG GCACAGTGAC GGTCAGTTGT AGCGCTACCC TTGGGCTGTT GTTCAATTGG
ACGATCGCGC TCAATGCGGG TGTCAACAGC GGTGGCAGCT TTTCCAACCG ACGGATGGCC
TCCGGAAACT CCTATTTATC CTACCAACTC TATACCGATT CCGGGCATAC TACGGTATGG
GGCGACGGTA CAAGCGGCAC CGCGACGGTC AGTGGTAATT GTCTAATTAG TTTCCTGGGC
ATACCCTGCT CTGGCAGCGC CACCGTCTAC GGCCAGATTC CTGCCCTGCA AAATCCAAGC
CCCGGCGCCT ACACCGACAC CATTACGGTA ACGGTCACGT ACTGA
 
Protein sequence
MKRKLALAAL LIFAPTAVDA ACSVTATGVA FGTYVPSAAS NSTGTVTVSC SATLGLLFNW 
TIALNAGVNS GGSFSNRRMA SGNSYLSYQL YTDSGHTTVW GDGTSGTATV SGNCLISFLG
IPCSGSATVY GQIPALQNPS PGAYTDTITV TVTY