Gene Lferr_0003 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLferr_0003 
Symbol 
ID6875952 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidithiobacillus ferrooxidans ATCC 53993 
KingdomBacteria 
Replicon accessionNC_011206 
Strand
Start bp2993 
End bp4045 
Gene Length1053 bp 
Protein Length350 aa 
Translation table11 
GC content62% 
IMG OID642787882 
ProductDNA replication and repair protein RecF 
Protein accessionYP_002218472 
Protein GI198282151 
COG category[L] Replication, recombination and repair 
COG ID[COG1195] Recombinational DNA repair ATPase (RecF pathway) 
TIGRFAM ID[TIGR00611] recF protein 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00329262 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000397503 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGCCCCTGG AGGCACTGCA TATCCAGTCT GTGCGTTGCA TAGAAACCTT GGATCTGAAA 
ACGGACCGCC AGTGGAACTG GCTGATAGGC GCCAACGGCG CGGGCAAGAG CTCGGTGCTG
GAAGCCATCC ACGTGCTTGG TACGGGGCAG ACCTGGCGAC ATGGGTCCCG CCATGTCCTG
CGGGAGGGGG ACGACGCCTA TCTGGTCAGT GCGCATCTGT CCGGTCATTT CCTCGCCCTG
CGCCGGCGTG GCGAAGAACG AGAAATACGC TATGATGGGG AGCCGCTCGG TTCTGCCTGG
CTACTGCTGG ATATTTTGCC TCTGCAAAGC CTGCACGAGG ACAACAGCCA CTTTGTCTCG
GGGACGGCGG AGGGCCGCCG GCGCGTACTG GACTGGGGCA TTTATTACGC AGACCGGTAT
TACGGCACGG TATTTCGCCA ATACCGACGG GCGTTGCAGC AACGCAATGC CTGGCTGAAA
AGCGATCATG GCCGACAACC CTGGGACGAT GGTGTCATCG TCGCCGGCGA AGACATCCAG
CAGCGGCGGC AGGCCCATCT CGCCGCTGTG CAGCTCGAAG TCGTGACCCT CTGGGAACGC
TGGTCCGGAT CATTGTCCGG GCTCAGTCTG CATCTGCACA GCGGTTGGAA GGAAGGCATG
GCGCTGGGCG ACTGCCTGCT GCGGGATCAC GAACAGGATC GCGAAGCGGG CTATACCCAC
AGCGGCCCGC ATCGCGCCAA TCTGGCATTC CGGGTACGCG GCAAACCGGC ACCGGATATT
CTTTCGCGGG GCCAGTTGCG GGTATTGGGT CTGGCCTATC GTCTGGCGCA GGTGAAAATC
CTGAAGCAGG CCGGGTTGCC CCTGCCGACC ATACTGATCG ACGATTTCGC GGCGGAGCTG
GACGCTTCGG CACGGGATTG GTGGGTCAAC GAACTCGATC TGCTGGGTGT GCAGATCTTT
GCTGCGGTCA CCACCGCCCG GCAGATTCCG GCGACGGTGG GCGGCAGTCA TTTTTGTCTG
GCAGCAGGCC AGCTTGAGAA GGAAACGGCA TGA
 
Protein sequence
MPLEALHIQS VRCIETLDLK TDRQWNWLIG ANGAGKSSVL EAIHVLGTGQ TWRHGSRHVL 
REGDDAYLVS AHLSGHFLAL RRRGEEREIR YDGEPLGSAW LLLDILPLQS LHEDNSHFVS
GTAEGRRRVL DWGIYYADRY YGTVFRQYRR ALQQRNAWLK SDHGRQPWDD GVIVAGEDIQ
QRRQAHLAAV QLEVVTLWER WSGSLSGLSL HLHSGWKEGM ALGDCLLRDH EQDREAGYTH
SGPHRANLAF RVRGKPAPDI LSRGQLRVLG LAYRLAQVKI LKQAGLPLPT ILIDDFAAEL
DASARDWWVN ELDLLGVQIF AAVTTARQIP ATVGGSHFCL AAGQLEKETA