Gene SeD_A5007 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A5007 
Symbol 
ID6873095 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand
Start bp4837571 
End bp4838254 
Gene Length684 bp 
Protein Length227 aa 
Translation table11 
GC content46% 
IMG OID642787874 
Productpili assembly chaperone 
Protein accessionYP_002218464 
Protein GI198242581 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3121] P pilus assembly protein, chaperone PapD 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.42605 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones86 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAACACA TAAAGAAATC CGTGTTGGCC GTATTACTGA CAAGCCATGT TGCCCATGCC 
AGCATTGTTG TTGGCGGAAC CCGACTGGTT TTCGACGGCA ATAATGATGA GTCGTCAATC
AATGTAGAGA ATAAAGACAG CAAAGCGAAT CTTGTTCAGT CATGGTTATC GGTTGCCGAT
CCCCAGGTCA CAAATAAGCA GGCGTTTATT ATCACCCCGC CTCTTTTTCG CCTTGATGCC
GGGCAAAAGA ACAGCATTCG GGTTATTCGC TCTGGCGCCC CTCTACCTGC AGATCGGGAG
TCTATGTACT GGCTCAATAT TAAGGGTATT CCTTCTATTG ATGATAATGC CTCCGCGAAC
CGCGTGGAAA TCTCCATTAA TACCCAAATA AAGCTTATAT ATCGACCACC AGCATTAACA
AAATCAACGC CTGATAGCCA GAGCCAACAA TTAAAATGGC AGACGGCAGG TGATGTTATT
ACCGTAAATA ACCCCACTCC CTATTATATG AACTTTGCCA GTGTGACGCT TAACAGCCAT
GAAGTGAAAT CAGCGACCTT CGTTCCGCCA AAATCATCAG CGTCATTTAA ATTGGGTTCT
ACTGCCGCCC CTCATGGCAC GGTAACGTGG CGATTAATCA GCGATTATGG GATGAGTTTA
GAGCCGCATT CCGGTTCATT CTAG
 
Protein sequence
MKHIKKSVLA VLLTSHVAHA SIVVGGTRLV FDGNNDESSI NVENKDSKAN LVQSWLSVAD 
PQVTNKQAFI ITPPLFRLDA GQKNSIRVIR SGAPLPADRE SMYWLNIKGI PSIDDNASAN
RVEISINTQI KLIYRPPALT KSTPDSQSQQ LKWQTAGDVI TVNNPTPYYM NFASVTLNSH
EVKSATFVPP KSSASFKLGS TAAPHGTVTW RLISDYGMSL EPHSGSF