| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A4985 |
|---|
| Symbol | deoD |
|---|
| ID | 6871051 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011205 |
|---|
| Strand | + |
|---|
| Start bp | 4814669 |
|---|
| End bp | 4815388 |
|---|
| Gene Length | 720 bp |
|---|
| Protein Length | 239 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 642787855 |
|---|
| Product | purine nucleoside phosphorylase |
|---|
| Protein accession | YP_002218445 |
|---|
| Protein GI | 198245838 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0813] Purine-nucleoside phosphorylase |
|---|
| TIGRFAM ID | [TIGR00107] purine-nucleoside phosphorylase, family 1 (deoD) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 103 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAACTC CACATATTAA TGCAGAAATG GGTGATTTCG CTGACGTCGT ATTGATGCCG
GGCGACCCGC TGCGTGCGAA GCACATTGCT GAGACTTTCC TCGAAGATGT TCGCGAAGTG
AACAACGTTC GCGGCATGTT AGGTTTCACC GGGACTTACA AAGGACGTAA GATCTCCGTG
ATGGGCCACG GTATGGGTAT CCCGTCCTGC TCCATCTACA CCAAAGAGCT GATCACCGAT
TTCGGCGTGA AGAAAATCAT TCGCGTCGGC TCCTGCGGCG CTGTGCGCAT GGACGTCAAA
CTGCGCGACG TGGTGATCGG TATGGGTGCC TGCACCGACT CCAAAGTGAA CCGTATCCGC
TTTAAAGATC ATGACTTTGC GGCTATCGCT GACTTCGACA TGGTACGTAA CGCAGTTGAT
GCGGCAAAAG CGCTGGGCGT TGACGCGCGC GTAGGCAACC TGTTCTCCGC TGACCTGTTC
TACTCTCCGG ACGGCGAAAT GTTCGACGTG ATGGAAAAAT ATGGCGTACT GGGCGTAGAG
ATGGAAGCGG CGGGTATCTA CGGCGTTGCG GCTGAATTTG GCGCGAAAGC GCTGACTATC
TGCACCGTGT CCGACCATAT CCGTACCCAC GAGCAGACCA CTGCCGCTGA GCGACAGACG
ACCTTCAACG ACATGATCAA AATCGCGCTG GAATCTGTGC TGCTGGGCGA CCAGGAGTAA
|
|---|
| Protein sequence | MATPHINAEM GDFADVVLMP GDPLRAKHIA ETFLEDVREV NNVRGMLGFT GTYKGRKISV
MGHGMGIPSC SIYTKELITD FGVKKIIRVG SCGAVRMDVK LRDVVIGMGA CTDSKVNRIR
FKDHDFAAIA DFDMVRNAVD AAKALGVDAR VGNLFSADLF YSPDGEMFDV MEKYGVLGVE
MEAAGIYGVA AEFGAKALTI CTVSDHIRTH EQTTAAERQT TFNDMIKIAL ESVLLGDQE
|
|---|
| |