Gene SeD_A4948 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A4948 
Symbol 
ID6875710 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand
Start bp4781590 
End bp4784355 
Gene Length2766 bp 
Protein Length921 aa 
Translation table11 
GC content54% 
IMG OID642787818 
Productsigma-54 interaction domain-containing protein 
Protein accessionYP_002218411 
Protein GI198243082 
COG category[K] Transcription 
COG ID[COG3933] Transcriptional antiterminator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.725422 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones56 
Fosmid unclonability p-value0.337098 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCAAAG ATGCCCTGCT TGCTTTCCTG ATGAACCAAA CGGATTTTTT TGATCCGGAA 
AATGTCAGTG AGGTGTTTAC CGCGCGCTAT CTGGCGCAGC GTTTTAATAT GCAGCGTAAT
ACCGCCAGCC ATTATCTGAA CCAACTGGTG GCGCAGGGCG TGCTCTGCAA AATCAATACC
CGTCCTGTCT ATTTCCTGCA TAAGCAGGCA TTTAGCCAAC AGTTTTTTAC CCTTTCGCGT
AATGAATACG CCAGCGTCGC GGAGCTGTTA GCGCACGGGG AACAGGAGTG CGCGCCGGAC
GATCACTTTT CTCTGTTGAT TGGTCATAAC GAAAGCCTGA AGCGGCCGAT TGAGCAACTG
AAAACCGCGC TGTTTTATCC CGACGGCGGA CTGCCGCTAC TGATGACCGG CGAAAGCGGC
ACTGGGAAAA GTTATCTGGC GCAGCTCATG CACGAATATG CCATCGCCCA GGCGCTTCTG
TCGCCGGATG CGCCATTTAT CAGTTTTAAT TGCGCCCAGT ATGCGAGCAA TCCCGAACTG
CTGGCTGCGA ATCTTTTTGG CTATGTGAAG GGCGCGTTTA CCGGCGCGCA GAGCGACAGA
CCGGGCGCGT TCGAGGTGGC TGACGGCGGC ATGTTATTTC TGGATGAAGT CCACCGGCTG
AGCGCCGAAG GGCAGGAGAA GCTCTTTACC TGGCTCGATC GTGGTGAAAT TTATCGGGTA
GGCGACACCG CGCAGGGGCA TCCGGTTTCG GTACGTCTGG TATTTGCGAC GACCGAAGAG
ATACACAGTA CCTTTCTGAC GACATTTTTG CGACGCATCC CGATTCAGGT CAACCTGCCG
GATCTCCAGC ACCGTAGCCG CCAGGAAAAA GAGGCGCTGA TCTTACTGTT TTTCTGGACG
GAGGCGAAAA AACTTTCGGC CACGCTTATC CTCAAACCGC GTTTGTTGCA GATCCTCAAT
CAATATGTTT ATCGCGGCAA CGTCGGCGAG CTGAAAAATG TGGTGAAGTA TGCGGTGGCG
ACGGCATGGG CGAAAAAGCC TGGGCAGGAA ACCGTTACCG TGTCGCTGCA CGATCTGCCG
GATGCCATGC TGTCGGCATT GCCGTCACTG AATGAACCGC TGGCGGACGA CACGCCGGTG
AGCATCTCGC CCGACACGAA CCTTACCTGG CTGCTGCGCG CCCGCGACGA GATGCAGGGC
ATGATCCATG ATACGCAGTG TCATGTGCTG GCGCTGTACG AGCTGGTACG TAGCGGGAAA
GAGGGGTGGG AGACGGTACA AAAAAGAATG GGCGATGAAA TTGAGACCCT CTTCGATCGC
CTGATTTTTA CCGGCGACGA TAATGTGCAC TCACAGCGGT TGCTGTTAAT TACAAGCCAG
GTGCGGGAAG AGTTTTATCG TCTGGAGAAG CGCTTCAATA TGCAGCTTAA CGGCAACTGT
ATTTACGCGC TTAGCCACTA TTTAATCCAT CGTACCGCAC TGGCGCCTTC TCGTCTCAAC
AGCGAGCAGA TCCGCCAACT GGACGCCTTC CTCGCCCAGA AATATCCGCT ACTGTACAGC
TTTTGTTTAC AAATTCTGGA GACGCTGGGC CAGAAGCTGG ATCTGGAGCC GAGACGCATT
GATATGCTGC TGCTGGCGCT TTGGCTGCAT AAACAGGGGG CTAACAACCA AAAACAGGTG
ACGCATGCGG TGATTCTGGC GCACGGCTAT GCCACCGCCA GCAGTATCGC CAACGTCGCC
AACCGGCTAC TGAAAAATAC GATTTTTGAA TCGTTCGATA TGCCGCTGGA CGTCACGCCG
GAGGCGATAG CGCAGCAGGT GATGCGCTAT CTGGAAGAGC ATCCGCTCGC CTACGGCCTG
ATGATTCTGG TGGATATGGG ATCGCTCAAG GCCATTCATC GCCATTTTGA TCGCGCGCTT
TCCACGCCGG TGACGATTAT CAACAACGTC TCGACCAGCA TGGCCCTGTA TGTAGGGGAG
CGTATTTTAC AGGGGCATTT TATTGAAGAG ATCGCCCGCG ATATCGCCCG GGATGTGCCG
GTCGAGTATC AGCTCTACTG GCCGAAAAGC AACAAACCGC GCGCCATACT GACCACCTGC
GCGACCGGTA TCGGTGTGGC GACGAATCTT TGCGCATTGC TGAGCGCCAG TATTCCACAG
GCGCTGGAGA TTGACGTCGT CGCCTGCGAT TATGCGATGC TGGCGAACAA TAAAACCCAG
GAGCCGGTAT TTATGCGCTA CGACGTACTG GCGATAGTTG GCACGCTGGA CCCGCACATC
GCCAGCGTGC CGTGGATTTC GCTCGACTCG CTGATCTCCG GCGAGGGGAA CCACTACCTG
ATGCGGCTGT TTGGTTCGCT AACCACTCCG GAGCAGGTGG CGGAGATCAA CAACCTGCTG
CTGAAAAATT TCTCGCTCCG ACGAGTGATC GAATCCGTCA CCATCCTCGA CACCAGCAAA
GTCATCAACC ACGTTGAGCA GTTTCTGCTG CGCTATGAGC ATCTGGCGGG CGTTACCGTC
TCGAATGAAA GAAAGGTGGC GCTCTATGTG CATATTAGTT GCCTGATTGA GCGTCTGATC
CGCCATGCGG GCATTACTGC CTGGAGTGGG CAACAGTGTC CGGAACAGGA ACTGAATCGG
CTACGGGAAG CGTTTAGTGT CATTGAGAGT AACTACAGTG TCAAAATCCC CACCGCCGAG
CTTGGCTATA TTCATAATAT CCTGACCTTC GAAACAGAAC TTATCGAGCA AGATCAACAG
TTTTAA
 
Protein sequence
MRKDALLAFL MNQTDFFDPE NVSEVFTARY LAQRFNMQRN TASHYLNQLV AQGVLCKINT 
RPVYFLHKQA FSQQFFTLSR NEYASVAELL AHGEQECAPD DHFSLLIGHN ESLKRPIEQL
KTALFYPDGG LPLLMTGESG TGKSYLAQLM HEYAIAQALL SPDAPFISFN CAQYASNPEL
LAANLFGYVK GAFTGAQSDR PGAFEVADGG MLFLDEVHRL SAEGQEKLFT WLDRGEIYRV
GDTAQGHPVS VRLVFATTEE IHSTFLTTFL RRIPIQVNLP DLQHRSRQEK EALILLFFWT
EAKKLSATLI LKPRLLQILN QYVYRGNVGE LKNVVKYAVA TAWAKKPGQE TVTVSLHDLP
DAMLSALPSL NEPLADDTPV SISPDTNLTW LLRARDEMQG MIHDTQCHVL ALYELVRSGK
EGWETVQKRM GDEIETLFDR LIFTGDDNVH SQRLLLITSQ VREEFYRLEK RFNMQLNGNC
IYALSHYLIH RTALAPSRLN SEQIRQLDAF LAQKYPLLYS FCLQILETLG QKLDLEPRRI
DMLLLALWLH KQGANNQKQV THAVILAHGY ATASSIANVA NRLLKNTIFE SFDMPLDVTP
EAIAQQVMRY LEEHPLAYGL MILVDMGSLK AIHRHFDRAL STPVTIINNV STSMALYVGE
RILQGHFIEE IARDIARDVP VEYQLYWPKS NKPRAILTTC ATGIGVATNL CALLSASIPQ
ALEIDVVACD YAMLANNKTQ EPVFMRYDVL AIVGTLDPHI ASVPWISLDS LISGEGNHYL
MRLFGSLTTP EQVAEINNLL LKNFSLRRVI ESVTILDTSK VINHVEQFLL RYEHLAGVTV
SNERKVALYV HISCLIERLI RHAGITAWSG QQCPEQELNR LREAFSVIES NYSVKIPTAE
LGYIHNILTF ETELIEQDQQ F