| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A4929 |
|---|
| Symbol | |
|---|
| ID | 6875413 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011205 |
|---|
| Strand | - |
|---|
| Start bp | 4762682 |
|---|
| End bp | 4765948 |
|---|
| Gene Length | 3267 bp |
|---|
| Protein Length | 1088 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 642787803 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002218396 |
|---|
| Protein GI | 198245499 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0610] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases |
|---|
| TIGRFAM ID | [TIGR00348] type I site-specific deoxyribonuclease, HsdR family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.511306 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 61 |
|---|
| Fosmid unclonability p-value | 0.806169 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCATCTCT CATTCAGTGA AGCGAAGTTA GAACAGGCGA TAATTGAACT GTTACAGGAT
CAGGGCTATC AGCACCTGAT CGGCGATAAT GTGCCGCGTT CCAGCCTCGA TCAGGTGATT
ATCGAAGACG ATCTTCGTCA CTACCTCGCC GCACGCTATC AGGCCGACGG CATCACCGAA
GAGGAGATCC AGCGGCTGAT CAAACAGTTC ACCACCCTGC CCGCCTCCGA TCTCTATGAA
AGCAACAAAA CCTTCTGCGC CTGGCTGGCC AACGGTTTCC TGTTTAAACA CGACGATCGC
CAGCAGAAAG ATCTCTATAT CGAACTGCTC GACACCCGGC ATCTGCCCGC CGCGCTGCGT
GAACTGTTCG ATACCGAAGA TGTGCCGCTG CAACAGGCCG CAGAAACGCC GGCAAGTTAT
CATCTTATCC AGCCGCTGAA CCGGGTAAAA ATCGTCAATC AGCTGACCAT CACCGGCAAA
GAAAACCAGC CGCGTATCCC GGATGCCATT CTGTATATCA ACGGCCTGCC GTTAGTAGTG
TTTGAATTTA AAAGTGCGGT GCGCGAGCAG GAAGCCAATA TTGGCGATGC CTGGAAACAG
CTCTGCACCC GCTATCGCCG CGATATTCCG CAGCTGTTTG TCTATAACGC GCTGTGCATT
ATCAGCGACG GCGTCAATAA CCGCATGGGC AACCTGTTTG CGCCGTACGA GTATTTCTAT
TCCTGGCGCA AAGTCACCGG CAATGAAAAC CGCGAGCAGA ACGGCATCCC TTCCCTGCAC
TCGATGATTC AGGGGCTGTT TCACCCGGTC CGCCTGCTGG ACGTGATCAA AAACTTTATC
TGCTTCCCGG ATAAAGCCAA ACACGAAGTG AAAATCTGCT GCCGCTACCC GCAGTACTAT
GCGGCACGCA AGCTGTATTA CAGCATCGAA CGGGCGCGTA AACCTTTCGG CGACGGCAAG
GGCGGCACCT ACTTTGGCGC AACCGGCTGC GGCAAGAGCT ACACCATGCA GTTCTTAACC
CGCCTGCTGA TGAAAAGCGT CGAATTCGCC AGCCCAACGA TCGTGCTGAT CACCGACCGC
ACCGATCTGG ACGATCAGCT CTCAGCGCAG ATGTGCAATG CCAAAAACTA TATCGGCGAC
GACACCGTGG TGCCCGTCAC CAGCCGCGAC GATCTGCGGG AGAAGCTGGC CGGTCGCAAC
AGCGGCGGCG TCTTCCTGAC CACCATCCAT AAATTTACCG AAGATACCGA ACTGCTCTCC
GAGCGCAGCA ATATCATCTG TATTTCCGAT GAAGCGCACC GCAGCCAGGT CAACCTCGAT
CAGAAAGTGA TCGTCGATAA AGAGAGCGGC AGGGTGCGTA AAACCTACGG TTTCGCCAAA
TATCTGCACG ACTCGCTGCC GCTGGCCACC TACGTTGGTT TTACCGGCAC CCCTATCGAC
GCCACGATGG ACGTCTTTGG CGTTATCGTG GACAGCTACA CCATGACTGA ATCCGTGCAG
GATGAGATCA CCGTGCGCAT CGTCTACGAA GGCCGCGCCG CGAAGGTCAT CCTCGATGCC
GGTAAGCTGG AAGAGGTGGA AAAGTATTAC GAAGAGTGCG CCAATGCGGG CACCAACGAG
TGGCAAATCG ACGAGAGCAA AAAAGCCAGC GCCACCATGA ACGCCATTCT TGGCGATGAA
GACCGCCTGA AAGCGCTGGC GGAAGACTTT GCGAAACACT ATGAAAAACG TGTCGCCGAA
GGCTCAACGG TGAAAGGCAA AGCGATGTTT GTCTGCGCCA GCCGCGAGAT TGCCTGGGAT
TTCTATCGTC AGTTGAAAGA CTTTCGTCCC GCGTGGTTTG AAGTTAAGCA GGCCCCGGAG
GGGGTTGAGC TGACCGGGCA GGAGGAGAAA GAGCTGCCGC CGTCCGAAAT GGTCAAGATG
GTGATGACAC GCGGTAAAGA CGATGACGCG AAACTGTACG ATTTGCTGGG CAGTAAAGAG
TACCGCAAAG AGCTGGATAA ACAGTTCAAA AACGCGAAGT CGAATTTCAA AATCGCCATC
GTGGTGGACA TGTGGCTGAC CGGTTTTGAC GTGCCGGAGC TGGACACCAT TTATATCGAT
AAGCCGCTGC AAAAGCATAA CCTGATCCAG ACCATCTCCC GCGTTAACCG CAAGATGGAA
GGCAAAAGCA AAGGGCTGGT CGTCGACTAT ATCGGCATTA AGCGCCAGAT GAACCAGGCG
CTGGCGATGT ATTCGCGCAT TGACGCCACC AACTTTGAAG ATATTCAGCA GTCAGTCATT
GAGGTGAAAA ATCATCTCGA TCTGCTGGCG CAGGTGTTCC ATGAATTCGA CAGCCGCCCT
TATTTCAGCG GCGAGCCGCA GGCGCAGCTT GCCTGCCTGA ACTTCGCGGC AGAATTTGTC
ATGCGCACCC AGAAGCTGGA ACGCCGCTTT ATGGGGCTGG TGAAGCGGCT GAAAGCGGCC
TATGACGTCT GCTGCGGCAG CGAGGCGCTG TCGCAGGCCG AGCGCGACCA TATCCATTTT
TACATTGCCG TGCGCTCTAT CGTCTTCAAG CTGACCAAAG GCGACGCGCC GGACCTCACA
CAGATGAACG CTCGCGTGCG CGAGATGATC GCCGAAGCGC TGAAAGCCGA CGGCGTGGAA
GAGCTATTTT TCCTCGGTGA CAAGAAAGCG GAGTCGATCG ATATTTTCGA CGATGATTAT
CTGGCGCGCA TTAATAAGAT CAAACTGCCG GCCACCAAAA TTCAGCTGCT GCAAAAGCTG
CTGGAAAAAG CCATCAGCGA CTTTAAACAG ATCAACCAGC TTCAGGGGAT CAATTTCACC
CGTCGTTTCC AGTCCATTAT GGATAAATAT AACGAGCGCC GGGAAGATGA CGTCCTCAAC
GGTGAAGAGT TTGATAACTT CAGCCAGGAG ATGACCGATA TTATCTACGA TATTAAAACC
GAGATGGGCA CCTATGCCGA GATGGGGATT GATATCGAAG AGAAAGCCTT TTACGACATT
CTGGCGCATA TGCGTGATAA GTATCAGTTT ACCTATGAGG ACGACAAGAT GCTGGCGCTG
GCAAAAGAGA TGAAGGCGGT GGTCGATAAC ACCTCGAAGT ATCCGGACTG GAGCAAGCGT
GATGATATTA AGGCGAAGCT GAAGGTGGAG CTAATCCTGC TGCTGCACAA GCACAAGTTC
CCGCCGGTGG CGAATGATGA TGTGTATATG GGCGTGCTGT CGCAGGCGGA GAATTTTAAG
CAGCACCATA GTCATACGCT GCATTAA
|
|---|
| Protein sequence | MHLSFSEAKL EQAIIELLQD QGYQHLIGDN VPRSSLDQVI IEDDLRHYLA ARYQADGITE
EEIQRLIKQF TTLPASDLYE SNKTFCAWLA NGFLFKHDDR QQKDLYIELL DTRHLPAALR
ELFDTEDVPL QQAAETPASY HLIQPLNRVK IVNQLTITGK ENQPRIPDAI LYINGLPLVV
FEFKSAVREQ EANIGDAWKQ LCTRYRRDIP QLFVYNALCI ISDGVNNRMG NLFAPYEYFY
SWRKVTGNEN REQNGIPSLH SMIQGLFHPV RLLDVIKNFI CFPDKAKHEV KICCRYPQYY
AARKLYYSIE RARKPFGDGK GGTYFGATGC GKSYTMQFLT RLLMKSVEFA SPTIVLITDR
TDLDDQLSAQ MCNAKNYIGD DTVVPVTSRD DLREKLAGRN SGGVFLTTIH KFTEDTELLS
ERSNIICISD EAHRSQVNLD QKVIVDKESG RVRKTYGFAK YLHDSLPLAT YVGFTGTPID
ATMDVFGVIV DSYTMTESVQ DEITVRIVYE GRAAKVILDA GKLEEVEKYY EECANAGTNE
WQIDESKKAS ATMNAILGDE DRLKALAEDF AKHYEKRVAE GSTVKGKAMF VCASREIAWD
FYRQLKDFRP AWFEVKQAPE GVELTGQEEK ELPPSEMVKM VMTRGKDDDA KLYDLLGSKE
YRKELDKQFK NAKSNFKIAI VVDMWLTGFD VPELDTIYID KPLQKHNLIQ TISRVNRKME
GKSKGLVVDY IGIKRQMNQA LAMYSRIDAT NFEDIQQSVI EVKNHLDLLA QVFHEFDSRP
YFSGEPQAQL ACLNFAAEFV MRTQKLERRF MGLVKRLKAA YDVCCGSEAL SQAERDHIHF
YIAVRSIVFK LTKGDAPDLT QMNARVREMI AEALKADGVE ELFFLGDKKA ESIDIFDDDY
LARINKIKLP ATKIQLLQKL LEKAISDFKQ INQLQGINFT RRFQSIMDKY NERREDDVLN
GEEFDNFSQE MTDIIYDIKT EMGTYAEMGI DIEEKAFYDI LAHMRDKYQF TYEDDKMLAL
AKEMKAVVDN TSKYPDWSKR DDIKAKLKVE LILLLHKHKF PPVANDDVYM GVLSQAENFK
QHHSHTLH
|
|---|
| |