Gene SeD_A4908 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A4908 
Symbol 
ID6874226 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand+ 
Start bp4745939 
End bp4746712 
Gene Length774 bp 
Protein Length257 aa 
Translation table11 
GC content54% 
IMG OID642787784 
ProductDNA-binding transcriptional repressor UxuR 
Protein accessionYP_002218377 
Protein GI198242237 
COG category[K] Transcription 
COG ID[COG2186] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones8 
Plasmid unclonability p-value0.305801 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones51 
Fosmid unclonability p-value0.0431827 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAATCAA ACACTTCTCA GCAAAGACCT TACCAGGAAG TGGGCGCAAT GATACGGGAT 
CTGATTGTTC AGACGCCGTA CCGCCCCGGG GAGCGCTTGC CACCGGAAAG AGAGATCGCT 
GAGAGGCTCA ATGTGACGCG TACCGTCGTG CGTGAAGCAC TGATCATGCT GGAAATTAAG 
GGTCTGGTTG AAGTCCGCCG CGGCGCCGGG ATCTACGTGC TCGACAGCGC GGATAATAAC 
GAGATGGAAG GCGCTGACGT CAATCACTGT AATGACGCCG GGCCGTTTGA ACTGTTACAG 
GCGCGTCAGT TGCTGGAAAG CAATATCGCT GAATTTGCCG CTCTGCAAGC CACCCGCGAA 
GACATCATTA AAATGCGCCA GGCGTTACAA CTGGAAGAGC GAGAGCTCGC CTCCAGCGCG 
CCGGGCGGCT CAGAAAGCGG CGATATGCAG TTTCATCTGG CCATTGCCGA AGCGACCCAT 
AACAGTATGT TGGTAGAGCT CTTCCGTCAG TCCTGGCAAT GGCGTGAAAA TAATCCGATG 
TGGCTCCAGC TTCATAGCCA TCTGGGCGAT ACGCTTTACC GTAAGGAGTG GCTGGTCGAT 
CATAAGCAGA TCCTCGCGGC GTTAATTAAG AAAGACGCCC GCGCAGCGAA GCTGGCGATG 
TGGCAGCACC TGGAAAACGT GAAGCAGCGT CTGCTGGAGT TTTCCAATGT TGATGACATC 
TACTTTGATG GCTATCTGTT TGAGTCATGG CCGCTGGACA ACGTTGATGC CTGA
 
Protein sequence
MKSNTSQQRP YQEVGAMIRD LIVQTPYRPG ERLPPEREIA ERLNVTRTVV REALIMLEIK 
GLVEVRRGAG IYVLDSADNN EMEGADVNHC NDAGPFELLQ ARQLLESNIA EFAALQATRE 
DIIKMRQALQ LEERELASSA PGGSESGDMQ FHLAIAEATH NSMLVELFRQ SWQWRENNPM 
WLQLHSHLGD TLYRKEWLVD HKQILAALIK KDARAAKLAM WQHLENVKQR LLEFSNVDDI 
YFDGYLFESW PLDNVDA