Gene SeD_A4866 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A4866 
Symbol 
ID6872082 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand- 
Start bp4717177 
End bp4718175 
Gene Length999 bp 
Protein Length332 aa 
Translation table11 
GC content50% 
IMG OID642787750 
ProductHTH-type transcriptional regulator IdnR 
Protein accessionYP_002218344 
Protein GI198242162 
COG category[K] Transcription 
COG ID[COG1609] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones4 
Plasmid unclonability p-value0.0303981 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones55 
Fosmid unclonability p-value0.118687 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGGAATC ACAGAATTTC TTTGCAGGAT ATCGCTACGC TTGCTGGCGT GACAAAAATG 
ACGGTGAGCC GTTACATCCG CTCGCCGAAA AAAGTCGCCA GGGAAACCGG CGAGCGTATT 
GCGCAGATCA TGGAGGAAAT TAACTACATA CCAAATCGCG CGCCAGCTAT GCTGTTAAAC 
GCGCAAAGTT ACACTCTGGG CGTGCTGATC CCCTCTTTCC AGAACCAGTT GTTTGCCGAC 
ATTCTTGCCG GGATTGAATC CGTAACGTCG GGTCATAACT ACCAAACTCT CATTGCGAAT 
TACAATTACA ATCGCGATTC GGAAGAAGAG TCCGTTATCA ATTTACTGTC TTACAATATC 
GACGGCATTA TTCTTTCAGA AAAATATCAT ACCCTCAGAA CCGTCAAATT CCTGCGCTCA 
GCTACCCTTC CGATTGTAGA ACTCATGGAC ATCCGGGGTG ATCGCTTAGA TATGGAGGTG 
GGGTTTGATA ACCGTCAGGC CGCCTTTGAT ATGGTCAGCA CCATGCTGGA TAAACGCCAG 
CGGCGAAAAA TCCTCTATCT GGGTTCAAAA GACGATATCC GAGATGAGCA GCGTTATCAC 
GGCTACTGCG ATGCGATGAC GCGCCGGGGG CTGGCGCCGT TGCGCATCAA TCCACGCGCT 
ATCTCCTCTA TCCATCTGGG GATACAGCTA ATGCGTGATG CGCTTACTGC GCACCCGGAC 
GTGGATGGCG TCTTTTGTAC AAATGACGAT ATCGCAATGG GCGCTCTACT GTGGTGCCGC 
GAGCGTCAAC TGGCCGTACC GGAGCAGATC TCCATCGCCG GCTTCCACGG TCTGGAGATG 
GGCAGGCAAA TGATACCGAG CCTCGCCAGC GTAATTACCC CTCGTTTTGA GATCGGGCGC 
AGAGCCGCGC AGATGTTGCT CAACAAAATT AAAAATAACG ATCTCAACCA TAATACGATT 
GATTTGGGCT ATCAGATTTA TCACGGCAGC ACGTTATAA
 
Protein sequence
MRNHRISLQD IATLAGVTKM TVSRYIRSPK KVARETGERI AQIMEEINYI PNRAPAMLLN 
AQSYTLGVLI PSFQNQLFAD ILAGIESVTS GHNYQTLIAN YNYNRDSEEE SVINLLSYNI 
DGIILSEKYH TLRTVKFLRS ATLPIVELMD IRGDRLDMEV GFDNRQAAFD MVSTMLDKRQ 
RRKILYLGSK DDIRDEQRYH GYCDAMTRRG LAPLRINPRA ISSIHLGIQL MRDALTAHPD 
VDGVFCTNDD IAMGALLWCR ERQLAVPEQI SIAGFHGLEM GRQMIPSLAS VITPRFEIGR 
RAAQMLLNKI KNNDLNHNTI DLGYQIYHGS TL