| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A4837 |
|---|
| Symbol | treR |
|---|
| ID | 6875487 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011205 |
|---|
| Strand | - |
|---|
| Start bp | 4690803 |
|---|
| End bp | 4691750 |
|---|
| Gene Length | 948 bp |
|---|
| Protein Length | 315 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 642787725 |
|---|
| Product | trehalose repressor |
|---|
| Protein accession | YP_002218319 |
|---|
| Protein GI | 198242111 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1609] Transcriptional regulators |
|---|
| TIGRFAM ID | [TIGR02405] trehalose operon repressor, proteobacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 74 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAAACC GGCTCACTAT CAAAGACATC GCCCGCCTGA GCGGCGTAGG GAAATCAACC
GTTTCCCGCG TGCTTAACAA TGAAAGCGGC GTAAGCGAAC GTACCCGCGA GCGTGTCGAA
GCGGTGATGA ATCAACACGG TTTCTCCCCG TCCCGCTCTG CCCGCGCGAT GCGGGGACAA
AGCGATAAAG TGGTCGCTAT TATCGTCACT CGCCTTGATT CGTTGTCTGA AAACCTCGCG
GTTCAGACCA TGCTGCCTGC GTTTTATGAA CAGGGCTACG ACCCTATTAT GATGGAAAGT
CAGTTCTCGC CGACGCTGGT AATGGAACAT CTGGGCATGC TCAGACGACG TAACATTGAT
GGCGTGGTGC TGTTTGGCTT TACCGGCATC ACAGAAGAGT TGATCGCCCC CTGGAAAGCC
TCGCTGGTGC TGCTGGCAAG AGATGCGCAA GGTTTTGCCT CCGTCTGTTA CGACGACGAG
GGCGCGATTC ATATCCTTAT GCAGCGGCTG TATGAGCAGG GACACCGCAA CATTAGCTTT
CTGGGCGTTC CCCATAGCGA TATTACCACC GGCAAACGTC GGCATGACGC ATACCTGGCG
TTTTGCAAAA AACATAAACT TCATCCCGTC GCCGCCCTGC CCGGTCTTGC CATGAAGCAG
GGCTATGAGC ATACGGCAAG CGTCATCATG CCGGATACCA CCGCGTTAGT CTGCGCCACC
GATACGCTGG CGTTGGGCGC CAGTAAGTAT TTACAGGAGC AACGTATTGA GACGCTGCAA
CTGGCAAGCG TCGGGAACAC GCCGCTGATA AAATTCCTGC ACCCGGAGAT CGTCACTGTC
GATCCTGGCT ATGCTGAAGC CGGACGACAG GCGGCTTCGC AGCTGATCGA ACAGATCAAT
GGCCGCTGCG ATCCGCGCCG GATCGTCATT CCTTCTACCC TCGCCTGA
|
|---|
| Protein sequence | MQNRLTIKDI ARLSGVGKST VSRVLNNESG VSERTRERVE AVMNQHGFSP SRSARAMRGQ
SDKVVAIIVT RLDSLSENLA VQTMLPAFYE QGYDPIMMES QFSPTLVMEH LGMLRRRNID
GVVLFGFTGI TEELIAPWKA SLVLLARDAQ GFASVCYDDE GAIHILMQRL YEQGHRNISF
LGVPHSDITT GKRRHDAYLA FCKKHKLHPV AALPGLAMKQ GYEHTASVIM PDTTALVCAT
DTLALGASKY LQEQRIETLQ LASVGNTPLI KFLHPEIVTV DPGYAEAGRQ AASQLIEQIN
GRCDPRRIVI PSTLA
|
|---|
| |