Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeD_A4801 |
Symbol | cpdB |
ID | 6873933 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
Kingdom | Bacteria |
Replicon accession | NC_011205 |
Strand | - |
Start bp | 4654937 |
End bp | 4656880 |
Gene Length | 1944 bp |
Protein Length | 647 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 642787691 |
Product | bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein |
Protein accession | YP_002218285 |
Protein GI | 198243810 |
COG category | [F] Nucleotide transport and metabolism |
COG ID | [COG0737] 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases |
TIGRFAM ID | [TIGR01390] 2',3'-cyclic-nucleotide 2'-phosphodiesterase |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 69 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATTAAGT TTAGTGCAAC GCTTCTGGCT ACGCTGATCG CCGCCAGCGT GAATGCGGCC ACCGTCGATC TCCGTATCAT GGAAACTACT GATTTACATA GCAACATGAT GGATTTCGAT TATTACAAGG ATACCGCAAC CGAAAAATTC GGATTGGTAC GTACCGCAAG TTTGATTCAT GCCGCCCGAA ATGAAGTCAA AAACAGCGTG CTGGTGGATA ACGGCGACCT GATTCAGGGG AGCCCTCTGG GCGATTATAT GGCGGCAAAA GGGCTCAAAG ACGGTGATGT TCACCCGGTC TATAAAGCGC TCAACACTCT GGATTACGCG GTTGGAAACC TCGGCAACCA TGAGTTTAAT TATGGTCTGG ACTATCTGCA TAACGCGCTG GCCGGCGCGA AATTCCCTTA TGTTAACGCC AATATTATCG ACGTTAAAAC CCAAAAGCCG CTCTTTACGC CTTATCTGAT TAAAGAGACG AGCGTTATTG ATAAAGACGG CCACCCGCAA ACTCTGAAAA TCGGCTATAT CGGCTTTGTT CCGCCGCAAA TCATGATTTG GGATAAAGCG AATCTGAGCG GCAAAGTTAC CGTCAATGAC ATTACGGAAA CCGCCCGGAA ATATGTGCCC GAAATGCGCG AGAAAGGCGC TGATATCGTG GTAGTCATTG CTCACTCAGG CCTTTCTGCC GATCCGTACC ACAGCATGGC GGAAAACTCG GTTTATTACC TCAGCGAAGT TCCCGGCGTC GACGCGATTA TGTTTGGCCA CGCCCACGCC GTCTTCCCCG GTAAAGATTT TGCCGACATC AAAGGCGCGG ATATCGCCAA AGGTACGCTT AACGGCATTC CTGCGGTAAT GCCTGGCATG TGGGGCGACC ATCTGGGAGT GGTCGATCTG GTGCTCAATA ACGACAGCGG CAAATGGCAG GTTACGCAGG CGAAAGCGGA AGCGCGGCCT ATTTACGACG CCGCCGCTAA AAAGTCGCTG GCGGCGGAAG ACAGTAAGCT GGTCGGTATT CTGAAAGCCG ATCACGATGC CACCCGCGAG TTTGTCAGCA AGCCCATCGG TAAATCCGCC GATAATATGT ACAGTTATCT TGCTCTGGTG CAGGACGATC CTACCGTACA GGTGGTGAAT AACGCGCAAA AAGCGTATGT GGAACACTTT ATTCAGGGCG ATCCGGATCT GGCGAAACTG CCGGTGCTGT CCGCCGCCGC GCCGTTTAAA GTTGGCGGGC GTAAGAACGA TCCTGCCAGC TTTGTCGAGG TGGAAAAAGG CCAGCTGACC TTCCGTAACG CCGCGGATCT TTATCTCTAT CCGAATACGC TGGTGGTGGT GAAAGCCAGC GGCAAGGAGG TAAAAGAGTG GCTGGAATGT TCTGCCGGAC AGTTTAATCA GATTGATATT CACAGCAACA AACCGCAATC GTTGATCAAT TGGGATGGCT TTCGCACCTA TAATTTCGAT GTCATTGACG GCGTGAATTA TCAAATCGAT GTGTCACAGC CCGCCCGCTA TGATGGCGAA TGCCAGATGG TGAATCCGCA GGCGGAACGT ATTAAAAACC TGACCTTTAA CGGTAAGCCT GTCGACCCGA ACGCTACGTT CCTGGTCGCC ACGAATAACT ATCGCGCTTA CGGCGGCAAG TTTGCCGGCA CGGGCGACAG CCATATCGCC TTTGCGTCTC CCGATGAAAA TCGCGCCGTG CTGGCGGCAT GGATTGGCGC AGAATCAAAA CGCGCGGGCG AAATCCATCC GGCGGCGGAT AATAACTGGC GTCTGGCGCC AATCCACAGC GATACGGCGC TGGATATCCG CTTTGAAACA TCGCCAGGCG ATAAAGCCGC TGCCTTCATT AAAGCGAAAG GGCAGTATCC GATGAAGAAG GTTGCCGTCG ATGATATCGG TTTTGCCATT TATCAGGTGG ATTTGAGCAA GTAA
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Protein sequence | MIKFSATLLA TLIAASVNAA TVDLRIMETT DLHSNMMDFD YYKDTATEKF GLVRTASLIH AARNEVKNSV LVDNGDLIQG SPLGDYMAAK GLKDGDVHPV YKALNTLDYA VGNLGNHEFN YGLDYLHNAL AGAKFPYVNA NIIDVKTQKP LFTPYLIKET SVIDKDGHPQ TLKIGYIGFV PPQIMIWDKA NLSGKVTVND ITETARKYVP EMREKGADIV VVIAHSGLSA DPYHSMAENS VYYLSEVPGV DAIMFGHAHA VFPGKDFADI KGADIAKGTL NGIPAVMPGM WGDHLGVVDL VLNNDSGKWQ VTQAKAEARP IYDAAAKKSL AAEDSKLVGI LKADHDATRE FVSKPIGKSA DNMYSYLALV QDDPTVQVVN NAQKAYVEHF IQGDPDLAKL PVLSAAAPFK VGGRKNDPAS FVEVEKGQLT FRNAADLYLY PNTLVVVKAS GKEVKEWLEC SAGQFNQIDI HSNKPQSLIN WDGFRTYNFD VIDGVNYQID VSQPARYDGE CQMVNPQAER IKNLTFNGKP VDPNATFLVA TNNYRAYGGK FAGTGDSHIA FASPDENRAV LAAWIGAESK RAGEIHPAAD NNWRLAPIHS DTALDIRFET SPGDKAAAFI KAKGQYPMKK VAVDDIGFAI YQVDLSK
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