Gene SeD_A4678 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A4678 
Symbol 
ID6870956 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand- 
Start bp4539938 
End bp4540627 
Gene Length690 bp 
Protein Length229 aa 
Translation table11 
GC content52% 
IMG OID642787579 
Producttetratricopeptide repeat protein 
Protein accessionYP_002218177 
Protein GI198244033 
COG category[R] General function prediction only 
COG ID[COG0790] FOG: TPR repeat, SEL1 subfamily 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones80 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAACTAC TTCTTGCATT GATGTTGTTT ATGACATTCT TTGCCCATGC CGCAGATCCT 
GAGCCGGGTA GCCAGTATTT GCAGGCAGCA GAGGCAGGTG ACAGACGCGC ACAATATTTT 
CTGGCCGACA GTTGGTTGAG CTATGGCGAT TTGAACAAAG CTGAATACTG GGCGCAAAAA 
GCCGCCGACA GTGGCGACGC CGACGCCTGC GCGCTACTGG CGCAAATCAA AATCACTAAT 
CCGGTAAGCC TGGATTATCC CGACGCGAAA AAGCTGGCTG AAAAGGCGGC TAACGCGGGC 
AGTAAAGCGG GCGAAATTAC GCTGGCGCGG ATCCTGGTCA ACACCCAGGC CGGGCGCCCG 
GACTACCCAA AAGCCATCTC GCTGCTGCAA AAGGCCTCTG AAGATCTGGA TAACGACTCC 
GCGGTGGATG CGCAAATGTT GCTTGGCCTG ATTTACGCCA ACGGCGTGGG CATTGCCGCC 
GATGATGAAA AAGCCGCCTG GTATTTCAAA CGCAGTTCCG CTATTTCCCG TACCGGCTAT 
TCAGAATACT GGGCGGGAAT GATGTTTTTA AACGGAGAAC CGGGCTTTAT TGAAAAGAAC 
AAGCAAAAGG CGTTGCATTG GTTGAATCTA AGCTGTCTGG AAGGGTTTGA TACCGGTTGC 
GAAGAGTTCG AAACGCTAAC AAATGGCTGA
 
Protein sequence
MKLLLALMLF MTFFAHAADP EPGSQYLQAA EAGDRRAQYF LADSWLSYGD LNKAEYWAQK 
AADSGDADAC ALLAQIKITN PVSLDYPDAK KLAEKAANAG SKAGEITLAR ILVNTQAGRP 
DYPKAISLLQ KASEDLDNDS AVDAQMLLGL IYANGVGIAA DDEKAAWYFK RSSAISRTGY 
SEYWAGMMFL NGEPGFIEKN KQKALHWLNL SCLEGFDTGC EEFETLTNG