| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A4675 |
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| Symbol | ccmF |
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| ID | 6872860 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011205 |
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| Strand | + |
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| Start bp | 4535286 |
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| End bp | 4537508 |
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| Gene Length | 2223 bp |
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| Protein Length | 740 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 642787576 |
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| Product | heme lyase subunit NrfE |
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| Protein accession | YP_002218174 |
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| Protein GI | 198243149 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG1138] Cytochrome c biogenesis factor
[COG3088] Uncharacterized protein involved in biosynthesis of c-type cytochromes |
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| TIGRFAM ID | [TIGR00353] c-type cytochrome biogenesis protein CcmF
[TIGR03147] cytochrome c nitrite reductase, accessory protein NrfF |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.224311 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 77 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGCATAATC TGGACATCTT CCTTCCTGAA GCCGGATTTC TGGCGCTGTT GTTGAGTCTC
GGGGTCAACG TGTTGACCCC GCTGGCGACG TGGTGCGGGA TGGGGCAGCA CTGGCGCGGC
GTCATGCGCC TGACGACCTG CGGCGCGTGG ACGGCGTTCA CGCTGCTGCT ACTGGCGTTT
GCGATTCTGG TTAGCTGTTT TCTGACCAGC GATTTTTCGG TCGTTTATGT TGCGCAGCAT
AGCCATAGTC AGTTGTCATG GGGACTGAAA CTGGCGGCGG TATGGGGCGG TCATGAAGGT
TCGCTCCTGC TGTGGGCGCT GCTTCTTTCG GGGTGGACGG CGCTATTCGC CTGGCGCTCC
CGGCATGAAT CTGACGCGCT TTTTCCGCTG ACCCTGAGCA TCTTGTCCTT CATTATGGCC
TCGCTGCTGC TATTTATTGT GCTGTGGTCC GATCCGTTCC TGCGTATTTT CCCTCCCGCC
ATGGAAGGGC GCGACCTTAA TCCCATGCTG CAACATCTGG GGCTGATCTT ACATCCGCCG
CTGCTCTATC TGGGTTATGG CGGCCTGATG ACCGCGGCGA GCGTAGCGCT GGCTTCGCTA
CTGTGCGGCG GCTTTAACGC CGCAACCGCC TGGGTTTGCT GGCGCTGGGT GTTACCGGGT
TGGTGCGCTC TGACGCTGGG GATCATTCTC GGATCGTGGT GGGCATATTG CGAACTGGGC
TGGGGCGGCT GGTGGTTCTG GGACCCGGTG GAAAATGCCT CGTTGTTGCC GTGGCTTGCC
GCCAGCGCGT TGCTGCACAG TCTGTATGTC AGCCGCCAGC GCGGGAGCTT CCGCCACTGG
TCGTTGCTGC TGGCGATACT GACGCTGATC CTCTCGTTGC TGGGAACGCT GATTGTGCGT
TCCGGCATTC TGCTCTCCGT CCATGCTTTT GCGCTGGATA ACGTGCGCGC GGTGCCGCTG
TTTATCCTTT TTGCCGCGTT AAGTCTGGCA TCGCTTGCTC TGTACGGCTG GCGGGCACGG
GAGCCGTATC CGGCGACGCG TTTGGGCGGC GGAAAGTGCG AAACGCTCAT TCTGACGACG
CTGCTGCTCT TTAGCGCCGT CTTGTTGATC GTGCTGGTCG GGACGCTCTA CCCCATGATT
TATGGTTTGA TGGGCTGGGG AAGGCTTTCG GTGGGCGCGC CCTATTTTAA TCGCGTCACG
CTGCCGTTTG GCCTGCTGAT GCTGGTAGTT ATCGTGCTGG CGACAATCAG AAGCCGCAAA
GTCTCTGTGC GTTGTCAGCT TCCGGCATTG CTGGCGCATA CGGGCGTATT TATCTTCGCC
GCCGGGATCA TGGTTTCCAG CGGTAGTCGG CATGAAATCA GCCTTAACCT CAACCCCGGC
CAGCAGGTGG TACTGGCGGG CTATACCTTT CGTTTCGAGC GTCTGGATCT GGAAGCCAAA
GGCAACTACA CCAGTGAAAA AGCGCGGATC ACGTTGTGGC GGAATGAAAA ACTCATTGGC
AGCCTGCAGC CTGAAAGGCG CTTCTATGCC GCGCGTCGTC AACAGATGAT GGAGCCGGGG
ATTCACTGGA ACCTGCTACA TGACTGGTAC GCGGTGATGG GCGAAAAAAC CGGACCGGAT
CGTTACGCCA TGCGCTTATA CGTGCAGACC GGCGTGCGCT GGATCTGGGG TGGGGGATTG
TTGATGGTGT GTGGAGCGCT GCTGAGCGGA TGGCGGGGGA GGAAGCATCC TGAGTTATTG
CCTGATGGCG CTGCGCTTAT CAGGCCTACG AGTGAAAAGC ATGGTAGGCC GGATAAGGCG
TTTACGCCGC CATCCGGCAA GACGATGTTA CTTGTGGCTT TTCTGATTTT TCTGCCTTTT
ACCACCCACG CCCAGGTGGT GGATACCTGG CGCTTTGACA ATCCACAACA GCAGGAAAAA
GCGCTATCTA TTGCCAGTCA ACTGCGCTGT CCGCAGTGTC AGAACCAGAA TTTGCTGGAA
TCCAATGCGC CCGTGGCGGT CAGTATGCGC CATCAGGTTT ACAGCATGGT GGCCGAAGGT
AAAAGCGAAG CGGAAATCAC CGCCTGGATG ACCGACCGTT ATGGTGATTT CGTACGCTAC
AACCCGCCGT TGAATGAGCA AACGCTGCTG TTGTGGGCGC TGCCGTGCCT GCTGTTATTG
CTGGTGGGCG TGGTGGTCTG GCGGGTGAGA AAGCGTCAGC ACGCAGAAGA GGGGGAACAA
TGA
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| Protein sequence | MHNLDIFLPE AGFLALLLSL GVNVLTPLAT WCGMGQHWRG VMRLTTCGAW TAFTLLLLAF
AILVSCFLTS DFSVVYVAQH SHSQLSWGLK LAAVWGGHEG SLLLWALLLS GWTALFAWRS
RHESDALFPL TLSILSFIMA SLLLFIVLWS DPFLRIFPPA MEGRDLNPML QHLGLILHPP
LLYLGYGGLM TAASVALASL LCGGFNAATA WVCWRWVLPG WCALTLGIIL GSWWAYCELG
WGGWWFWDPV ENASLLPWLA ASALLHSLYV SRQRGSFRHW SLLLAILTLI LSLLGTLIVR
SGILLSVHAF ALDNVRAVPL FILFAALSLA SLALYGWRAR EPYPATRLGG GKCETLILTT
LLLFSAVLLI VLVGTLYPMI YGLMGWGRLS VGAPYFNRVT LPFGLLMLVV IVLATIRSRK
VSVRCQLPAL LAHTGVFIFA AGIMVSSGSR HEISLNLNPG QQVVLAGYTF RFERLDLEAK
GNYTSEKARI TLWRNEKLIG SLQPERRFYA ARRQQMMEPG IHWNLLHDWY AVMGEKTGPD
RYAMRLYVQT GVRWIWGGGL LMVCGALLSG WRGRKHPELL PDGAALIRPT SEKHGRPDKA
FTPPSGKTML LVAFLIFLPF TTHAQVVDTW RFDNPQQQEK ALSIASQLRC PQCQNQNLLE
SNAPVAVSMR HQVYSMVAEG KSEAEITAWM TDRYGDFVRY NPPLNEQTLL LWALPCLLLL
LVGVVVWRVR KRQHAEEGEQ
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