| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A4570 |
|---|
| Symbol | thiC |
|---|
| ID | 6874685 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011205 |
|---|
| Strand | - |
|---|
| Start bp | 4410927 |
|---|
| End bp | 4412822 |
|---|
| Gene Length | 1896 bp |
|---|
| Protein Length | 631 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 642787478 |
|---|
| Product | thiamine biosynthesis protein ThiC |
|---|
| Protein accession | YP_002218080 |
|---|
| Protein GI | 198244147 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0422] Thiamine biosynthesis protein ThiC |
|---|
| TIGRFAM ID | [TIGR00190] thiamine biosynthesis protein ThiC |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 46 |
|---|
| Fosmid unclonability p-value | 0.0133622 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTACAA CAACGTTAAC CCGCCGCGAG CAGCGCGCTA AAGCCCAGCA TTTTATCGAT
ACGCTGGAAG GCACCGCGTT TCCCAACTCG AAACGCATCT ACGTGACCGG TTCGCAGCAT
GATATTCGCG TACCGATGCG CGAAATTCAA CTTAGCCCCA CGCTCATCGG CGGCAGTAAA
GACAACCCGC AGTTTGAAGA GAACGAAGCC GTACCGGTAT ACGACACCTC CGGCCCCTAT
GGCGATCCTG AGGTGGCGAT TAACGTCCAG CAGGGTCTGG CGAAACTGCG CCAGCCATGG
ATTGACGCAC GTAACGATAG CGAAGAATTA GACGACCGTA GCTCGGCTTA TACCAGAGAA
CGTCTGGCCG ACGATGGCCT GGACGATCTG CGTTTTACCG GCCTACTGAC GCCAAAACGC
GCTAAAGCGG GCAAGCGCGT CACCCAGTTA CACTACGCCC GCCAGGGGAT CGTCACTCCC
GAAATGGAGT TCATCGCCAT CCGTGAAAAT ATGGGCCGTG AGCGCATTCG CAGCGAAGTG
CTGCGCCACC AGCATCCGGG GATGAACTTT GGCGCGCGCC TGCCGGAAAA CATCACCCCG
GAATTCGTGC GTGATGAAGT CGCCGCGGGC CGCGCGATTA TTCCCGCCAA CATCAACCAC
CCGGAATCGG AGCCGATGAT TATCGGCCGC AACTTCCTGG TGAAGGTCAA CGCTAATATC
GGTAACTCGG CGGTCACCTC CTCCATCGAA GAAGAGGTGG AAAAACTGGT GTGGTCAACC
CGCTGGGGCG CGGATACGGT TATGGACCTC TCCACCGGCC GCTATATCCA CGAAACCCGC
GAATGGATCC TGCGTAACAG CCCGGTACCG ATCGGCACCG TCCCGATCTA CCAGGCGCTG
GAAAAGGTCA ACGGGATCGC CGAAGATCTT ACCTGGGAAG CGTTCCGCGA CACGCTGCTG
GAGCAGGCCG AACAGGGCGT CGACTACTTC ACCATCCACG CCGGCGTGCT GCTGCGCTAC
GTGCCGATGA CCGCCAAACG CCTGACCGGT ATTGTCTCGC GCGGCGGTTC GATCATGGCG
AAGTGGTGTC TCTCCCATCA CAAAGAGAAC TTCCTGTTCG AACATTTCCG CGAGATCTGC
GAAATCTGCG CCGCCTACGA CGTTTCCCTG TCGTTGGGCG ACGGCCTGCG CCCCGGCTCC
ATTCAGGACG CCAACGACGA AGCGCAGTTC TCCGAGCTGC ATACGCTGGG CGAGCTGACC
AAAATCGCCT GGGAATACGA CGTGCAGGTG ATGATTGAAG GCCCGGGTCA TGTACCCATG
CATATGATTC AGCGCAACAT GACCGAAGAG CTGGAGAGCT GCCATGAAGC ACCGTTCTAC
ACCTTAGGGC CATTGACTAC CGATATCGCG CCGGGCTATG ACCACTTCAC CTCCGGGATC
GGTGCCGCGA TGATCGGCTG GTTTGGCTGC GCGATGCTGT GTTATGTGAC GCCGAAAGAG
CATCTCGGCC TGCCGAACAA AGAAGATGTG AAGCAGGGGC TAATCACCTA CAAAATCGCC
GCCCACGCCG CGGATTTAGC CAAAGGACAT CCGGGCGCGC AGATCCGCGA TAACGCCATG
TCGAAAGCGC GCTTCGAATT CCGCTGGGAA GATCAGTTTA ACCTCGCGCT CGACCCGTTC
ACCGCCCGCG CTTATCACGA TGAAACCCTG CCGCAGGAGT CCGGCAAAGT CGCCCACTTC
TGTTCCATGT GCGGGCCGAA ATTCTGCTCG ATGAAAATCA GCCAGGGGGT CCGCGACTAC
GCCGCCGCGC AAGCCATTGA AGTCGGCATG GCGGATATGT CGGAGAACTT CCGCGCCAAA
GGCGGCGAAA TTTATCTCAA ACGGGAGGAA GCCTGA
|
|---|
| Protein sequence | MSTTTLTRRE QRAKAQHFID TLEGTAFPNS KRIYVTGSQH DIRVPMREIQ LSPTLIGGSK
DNPQFEENEA VPVYDTSGPY GDPEVAINVQ QGLAKLRQPW IDARNDSEEL DDRSSAYTRE
RLADDGLDDL RFTGLLTPKR AKAGKRVTQL HYARQGIVTP EMEFIAIREN MGRERIRSEV
LRHQHPGMNF GARLPENITP EFVRDEVAAG RAIIPANINH PESEPMIIGR NFLVKVNANI
GNSAVTSSIE EEVEKLVWST RWGADTVMDL STGRYIHETR EWILRNSPVP IGTVPIYQAL
EKVNGIAEDL TWEAFRDTLL EQAEQGVDYF TIHAGVLLRY VPMTAKRLTG IVSRGGSIMA
KWCLSHHKEN FLFEHFREIC EICAAYDVSL SLGDGLRPGS IQDANDEAQF SELHTLGELT
KIAWEYDVQV MIEGPGHVPM HMIQRNMTEE LESCHEAPFY TLGPLTTDIA PGYDHFTSGI
GAAMIGWFGC AMLCYVTPKE HLGLPNKEDV KQGLITYKIA AHAADLAKGH PGAQIRDNAM
SKARFEFRWE DQFNLALDPF TARAYHDETL PQESGKVAHF CSMCGPKFCS MKISQGVRDY
AAAQAIEVGM ADMSENFRAK GGEIYLKREE A
|
|---|
| |