Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeD_A4561 |
Symbol | rpoC |
ID | 6871863 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
Kingdom | Bacteria |
Replicon accession | NC_011205 |
Strand | + |
Start bp | 4400896 |
End bp | 4405119 |
Gene Length | 4224 bp |
Protein Length | 1407 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 642787469 |
Product | DNA-directed RNA polymerase subunit beta' |
Protein accession | YP_002218071 |
Protein GI | 198245606 |
COG category | [K] Transcription |
COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.412493 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 0.00000204853 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | GTGAAAGATT TATTAAAGTT TCTGAAAGCG CAGACTAAAA CCGAAGAGTT TGATGCGATC AAAATTGCTC TGGCTTCGCC AGACATGATC CGTTCATGGT CTTTCGGTGA AGTTAAAAAG CCGGAAACCA TCAACTACCG TACGTTCAAA CCTGAGCGTG ACGGCCTTTT CTGCGCCCGT ATCTTTGGGC CGGTAAAAGA CTACGAGTGC CTGTGCGGTA AGTACAAGCG CCTGAAACAT CGTGGTGTTA TTTGTGAGAA GTGCGGCGTT GAAGTGACCC AGACCAAAGT ACGCCGTGAG CGTATGGGCC ACATCGAGCT AGCGTCCCCG ACTGCTCACA TCTGGTTCCT GAAATCGCTG CCGTCCCGTA TCGGTCTGCT GCTCGATATG CCGCTGCGCG ATATCGAACG CGTACTGTAC TTCGAATCTT ATGTGGTTAT CGAAGGCGGT ATGACCAACC TGGAACGTCA ACAGATCCTG ACTGAAGAGC AGTATCTGGA CGCGCTGGAA GAGTTCGGTG ACGAATTCGA CGCGAAGATG GGTGCGGAAG CTATCCAGGC CCTGCTGAAG AGCATGGATC TGGAGCAAGA GTGTGAAACT CTGCGCGAAG AGCTGAACGA AACCAACTCC GAAACCAAGC GTAAAAAGCT GACCAAGCGT ATCAAACTGC TGGAAGCCTT CGTTCAGTCT GGCAACAAGC CAGAGTGGAT GATCCTGACC GTTCTGCCGG TTCTGCCGCC AGATCTGCGT CCGCTGGTTC CGCTGGATGG TGGTCGTTTC GCCACGTCAG ATCTGAACGA TCTGTATCGT CGCGTCATTA ACCGTAACAA CCGTCTGAAG CGTCTGCTGG ATCTGGCTGC GCCGGACATC ATCGTACGCA ACGAAAAACG TATGCTGCAG GAAGCGGTTG ACGCCCTGTT GGATAACGGT CGTCGCGGTC GTGCGATCAC CGGTTCTAAC AAGCGTCCTC TGAAATCTTT GGCCGACATG ATCAAAGGTA AGCAGGGTCG TTTCCGTCAG AACCTGCTCG GTAAGCGTGT TGACTACTCC GGTCGTTCTG TAATCACCGT AGGTCCATAC CTGCGTCTGC ACCAGTGCGG TCTGCCGAAG AAAATGGCGC TGGAGCTGTT CAAACCGTTC ATCTACGGCA AGCTGGAACT GCGTGGCCTT GCCACCACCA TCAAAGCCGC GAAGAAAATG GTTGAGCGTG AAGAAGCTGT CGTTTGGGAT ATCCTTGACG AAGTTATCCG CGAACACCCG GTACTGCTGA ACCGTGCACC GACTTTGCAC CGTCTGGGTA TCCAGGCATT TGAACCGGTA CTGATCGAAG GTAAAGCTAT CCAGCTGCAC CCGCTGGTTT GTGCGGCATA TAACGCCGAC TTCGATGGTG ACCAGATGGC TGTTCACGTA CCGCTGACGC TGGAAGCCCA GCTTGAAGCG CGTGCGCTTA TGATGTCCAC CAACAACATC CTGTCTCCGG CGAACGGCGA ACCTATCATC GTTCCGTCTC AGGACGTGGT ACTGGGTCTG TACTACATGA CCCGTGACTG TGTTAACGCC AAAGGCGAAG GCATGGTGCT GACTGGCCCG AAAGAAGCTG AGCGTATCTA TCGCGCAGGT CTGGCCTCTC TGCATGCGCG CGTTAAAGTG CGTATCACTG AATATGAAAA AGATGAAAAC GGCGAATTCG TTGCGCACAC CAGCCTGAAA GACACGACCG TTGGTCGCGC CATTCTGTGG ATGATCGTAC CGAAAGGTCT GCCTTTCTCC ATCGTCAACC AGGCGCTGGG CAAGAAAGCG ATCTCCAAAA TGCTGAACAC TTGCTACCGT ATTCTGGGCC TGAAACCGAC CGTTATTTTT GCGGACCAGA CGATGTACAC CGGCTTTGCT TATGCAGCGC GTTCAGGTGC GTCCGTTGGT ATTGATGACA TGGTCATCCC GGAGAAAAAA CACGAGATCA TCTCTGAGGC GGAAGCTGAA GTTGCTGAGA TCCAGGAGCA GTTCCAGTCT GGTCTGGTAA CCGCTGGCGA ACGCTATAAC AAAGTTATCG ATATCTGGGC TGCGGCGAAC GATCGTGTAT CTAAAGCGAT GATGGATAAC CTGCAAACCG AAACCGTGAT TAACCGTGAC GGCCAGGAAG AGCAGCAGGT CTCCTTCAAC AGCATCTATA TGATGGCCGA CTCCGGTGCG CGTGGTTCTG CGGCACAGAT TCGTCAGCTG GCAGGTATGC GTGGTCTGAT GGCGAAGCCG GATGGCTCCA TCATCGAAAC GCCAATCACC GCGAACTTCC GTGAAGGTCT GAACGTACTC CAGTACTTCA TATCCACGCA CGGTGCGCGT AAAGGTCTGG CGGATACCGC ACTGAAAACC GCGAACTCCG GTTATCTGAC CCGTCGTCTG GTTGACGTCG CGCAGGATCT GGTAGTGACC GAAGATGACT GTGGTACGCA CGAAGGTATC CTGATGACCC CGGTTATCGA GGGTGGCGAC GTGAAAGAGC CGCTGCGTGA CCGCGTTCTG GGCCGTGTGA CAGCAGAAGA TGTGCTGAAA CCGGGTACCG CGGACATTCT GGTTCCACGC AACACGCTGC TGCACGAACA GTGGTGTGAC CTGCTGGAAG CAAACTCCGT TGACGCCGTT AAAGTGCGTT CCGTTGTATC CTGCGACACC GACTTTGGTG TATGTGCGCA CTGCTATGGT CGTGACCTGG CGCGTGGCCA CATCATCAAC AAAGGTGAAG CTATCGGCGT TATCGCGGCA CAGTCCATCG GTGAACCGGG TACACAGCTG ACGATGCGTA CGTTCCACAT CGGTGGTGCG GCATCGCGTG CGGCTGCTGA ATCCAGCATC CAGGTGAAAA ATAAAGGTAG CATCAAGCTC AGCAACGTGA AGTCGGTTGT GAACTCCAGC GGTAAACTGG TTATCACTTC TCGTAACACC GAACTGAAGC TGATCGACGA ATTCGGTCGT ACCAAAGAGA GCTATAAAGT GCCTTATGGC GCTGTCATGG CGAAAGGTGA TGGCGAGCAG GTTGCCGGCG GCGAAACCGT GGCAAACTGG GACCCGCACA CCATGCCGGT TATCACTGAA GTGAGTGGTT TCATCCGCTT CACTGACATG ATCGACGGTC AGACCATTAC GCGTCAGACC GACGAACTGA CCGGTTTGTC TTCGCTGGTG GTTCTGGATT CGGCTGAACG TACTACCGGT GGTAAAGATC TGCGTCCGGC GCTGAAAATC GTTGATGCTC AGGGTAATGA CGTTCTGATC CCGGGTACCG ATATGCCTGC GCAGTACTTC CTGCCGGGTA AAGCGATTGT ACAGCTGGAA GATGGCGTAC AGATCAGTTC TGGTGACACC CTGGCGCGTA TTCCGCAGGA ATCCGGCGGT ACCAAGGATA TTACCGGTGG TCTGCCGCGC GTTGCGGATC TGTTCGAAGC GCGTCGTCCG AAAGAGCCAG CAATCCTTGC TGAAATCGCA GGTATCGTTT CCTTCGGTAA AGAAACCAAA GGCAAACGTC GTCTGGTGAT CACGCCGGTT GATGGTAGCG ATCCGTACGA AGAGATGATT CCGAAATGGC GTCAGCTCAA CGTGTTCGAA GGGGAACGTG TAGAACGTGG TGATGTGATT TCCGATGGTC CGGAAGCGCC GCACGACATT CTGCGTCTGC GTGGCGTTCA TGCTGTGACG CGTTACATTG TTAACGAAGT TCAGGATGTA TACCGTCTGC AGGGCGTTAA GATTAACGAT AAACACATCG AAGTTATCGT TCGTCAGATG CTGCGTAAAG CAACCATCGA AAGCGCCGGT AGTTCCGACT TCCTGGAAGG CGAACAGGTT GAATACTCTC GCGTCAAGAT CGCTAACCGC GAGCTGGAAG CGAACGGCAA AGTGGGGGCT ACCTTCTCCC GCGATCTGCT GGGTATCACC AAAGCGTCTC TGGCAACCGA GTCGTTCATC TCTGCCGCAT CGTTCCAGGA GACTACACGT GTCCTGACCG AAGCAGCCGT TGCGGGTAAG CGCGACGAAC TGCGCGGCCT GAAAGAGAAC GTTATCGTGG GTCGTCTGAT TCCGGCCGGT ACCGGTTATG CGTACCACCA GGATCGTATG CGCCGTCGCG CCGCGGGCGA GCAGCCAGCA ACACCGCAGG TCACTACGGA AGATGCATCT GCAAGCCTGG CAGAGCTGCT GAACGCAGGT CTGGGCGGTT CTGATCACGA GTAA
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Protein sequence | MKDLLKFLKA QTKTEEFDAI KIALASPDMI RSWSFGEVKK PETINYRTFK PERDGLFCAR IFGPVKDYEC LCGKYKRLKH RGVICEKCGV EVTQTKVRRE RMGHIELASP TAHIWFLKSL PSRIGLLLDM PLRDIERVLY FESYVVIEGG MTNLERQQIL TEEQYLDALE EFGDEFDAKM GAEAIQALLK SMDLEQECET LREELNETNS ETKRKKLTKR IKLLEAFVQS GNKPEWMILT VLPVLPPDLR PLVPLDGGRF ATSDLNDLYR RVINRNNRLK RLLDLAAPDI IVRNEKRMLQ EAVDALLDNG RRGRAITGSN KRPLKSLADM IKGKQGRFRQ NLLGKRVDYS GRSVITVGPY LRLHQCGLPK KMALELFKPF IYGKLELRGL ATTIKAAKKM VEREEAVVWD ILDEVIREHP VLLNRAPTLH RLGIQAFEPV LIEGKAIQLH PLVCAAYNAD FDGDQMAVHV PLTLEAQLEA RALMMSTNNI LSPANGEPII VPSQDVVLGL YYMTRDCVNA KGEGMVLTGP KEAERIYRAG LASLHARVKV RITEYEKDEN GEFVAHTSLK DTTVGRAILW MIVPKGLPFS IVNQALGKKA ISKMLNTCYR ILGLKPTVIF ADQTMYTGFA YAARSGASVG IDDMVIPEKK HEIISEAEAE VAEIQEQFQS GLVTAGERYN KVIDIWAAAN DRVSKAMMDN LQTETVINRD GQEEQQVSFN SIYMMADSGA RGSAAQIRQL AGMRGLMAKP DGSIIETPIT ANFREGLNVL QYFISTHGAR KGLADTALKT ANSGYLTRRL VDVAQDLVVT EDDCGTHEGI LMTPVIEGGD VKEPLRDRVL GRVTAEDVLK PGTADILVPR NTLLHEQWCD LLEANSVDAV KVRSVVSCDT DFGVCAHCYG RDLARGHIIN KGEAIGVIAA QSIGEPGTQL TMRTFHIGGA ASRAAAESSI QVKNKGSIKL SNVKSVVNSS GKLVITSRNT ELKLIDEFGR TKESYKVPYG AVMAKGDGEQ VAGGETVANW DPHTMPVITE VSGFIRFTDM IDGQTITRQT DELTGLSSLV VLDSAERTTG GKDLRPALKI VDAQGNDVLI PGTDMPAQYF LPGKAIVQLE DGVQISSGDT LARIPQESGG TKDITGGLPR VADLFEARRP KEPAILAEIA GIVSFGKETK GKRRLVITPV DGSDPYEEMI PKWRQLNVFE GERVERGDVI SDGPEAPHDI LRLRGVHAVT RYIVNEVQDV YRLQGVKIND KHIEVIVRQM LRKATIESAG SSDFLEGEQV EYSRVKIANR ELEANGKVGA TFSRDLLGIT KASLATESFI SAASFQETTR VLTEAAVAGK RDELRGLKEN VIVGRLIPAG TGYAYHQDRM RRRAAGEQPA TPQVTTEDAS ASLAELLNAG LGGSDHE
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