Gene SeD_A4449 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A4449 
Symbol 
ID6874535 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand+ 
Start bp4289516 
End bp4290187 
Gene Length672 bp 
Protein Length223 aa 
Translation table11 
GC content42% 
IMG OID642787367 
Productoligogalacturonate-specific porin 
Protein accessionYP_002217978 
Protein GI198246003 
COG category 
COG ID 
TIGRFAM ID[TIGR03304] outer membrane insertion C-terminal signal 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones85 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGAAAAT CTCTTTTCTT ACTATTACCT CTTGTTGTAA CAAATGCGCA TGCAGTATAT 
GTCGATGTTC GTCATGAATA TCTTGATGAC AGTAAAGCTA ACTATGACCG TGCGTATATT 
TCTCATCGGT TTGCGAATGG TGTTGGTTTT GCGATAGAAG CTATCTCAAA ATCAGGCGGG 
GATGACACCA ATAAAGCGTT TAATGACCTG GAAACACAGG GCAACGAATA TACGATAAGC 
TACCAATTTA AAACCGGTGA TGTCGCCTGG CAACCGGGTT TTGTGCTGGA AACAGGCAAC 
GGTTACTCTA CCTATAAGCC TTACTTCCGC GCGACGTGGA CATTAAATGA AAGCTGGTGG 
GTTGGTGCGC GCTATCGTTT TGAATATGTA CGCCGTTCTT CTGATATCCG TGATGATGAT 
ACCATCAATC GTATGGATGT CTGGGCGGGT TATAAATGGA ACAACTTTGA CTGGACAATC 
GAAGGAATTT ATAAGAAAGC CGATAAATAT GATCTTTACG ATGGCGGCAA AGATAACTAT 
GAATATAACT TCAGAACTGC CTATATTATT GATCAATGGT CGCCATTCGT TGAGGTAGGT 
AATGTTTCCG TCAATAGCAA CAGCGATGAA AGACAAACCC GTTTCCGCGT GGGTATAGGC 
TACACATTCT AA
 
Protein sequence
MRKSLFLLLP LVVTNAHAVY VDVRHEYLDD SKANYDRAYI SHRFANGVGF AIEAISKSGG 
DDTNKAFNDL ETQGNEYTIS YQFKTGDVAW QPGFVLETGN GYSTYKPYFR ATWTLNESWW 
VGARYRFEYV RRSSDIRDDD TINRMDVWAG YKWNNFDWTI EGIYKKADKY DLYDGGKDNY 
EYNFRTAYII DQWSPFVEVG NVSVNSNSDE RQTRFRVGIG YTF