Gene SeD_A4444 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A4444 
Symbol 
ID6873987 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand+ 
Start bp4287006 
End bp4287854 
Gene Length849 bp 
Protein Length282 aa 
Translation table11 
GC content50% 
IMG OID642787362 
Producttranscriptional activator RhaR 
Protein accessionYP_002217973 
Protein GI198243593 
COG category[K] Transcription 
COG ID[COG2207] AraC-type DNA-binding domain-containing proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones83 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGCAAATC AGTTAATCCT TTTGAAAAAA GATTTTTTTA CTGATGAGCA GCAGGCCGTT 
ACGGTTGCCG ATCGCTATCC ACAGGATGTT TTTGCGGAAC ATACGCATGA GTTTTGTGAA 
CTGGTGATGG TCTGGCGGGG CAATGGCCTA CACGTTCTTA ATGAGCGCCC ATACAGAATT 
ACCCGCGGCG ATCTGTTTTA CATTCGTGCT GAAGACAAAC ATTCCTATAC CTCCGTTAAC 
GATCTGGTGC TGCAAAATAT TATTTACTGC CCGGAGCGTT TGAAACTCAA TGTAAACTGG 
CAGGCGATGA TTCCCGGCTT TCAGGGAGCG CAGTGGCATC CTCACTGGCG GCTGGGCAGT 
ATGGGAATGA ATCAGGCGCG GCAGGTCATT AACCAGCTTG AACATGAGAG TAATGGACGC 
GATCCGCTGG CGAATGAGAT GGCGGAATTG CTGTTTGGTC AACTGGTGAT GACGTTAAAA 
CGGCATCGCT ACGCGACCGA CGATCTTCCG GCAACCTCCC GAGAAACCCT GTTGGATAAA 
TTAATTACCG CTTTGGCTAA TAGCCTTGAG AGCTCCTTTG CGCTGGATGC GTTTTGTCAG 
CAGGAACAAT GCAGCGAACG GGTGCTGCGG CAGCAGTTTC GCGCCCAAAC CGGGATGACG 
ATTAATCAAT ATTTACGCCA GGTCCGTATT TGCCACGCGC AGTATCTGCT TCAGCATAGC 
CCGCTGATGA TTAGCGAGAT TTCGATGCAG TGTGGCTTTG AAGATAGTAA TTATTTTTCA 
GTGGTGTTCA CGCGGGAAAC CGGGATGACG CCGAGCCAAT GGCGTCATCT CAGTAATCAA 
AGCGATTAA
 
Protein sequence
MANQLILLKK DFFTDEQQAV TVADRYPQDV FAEHTHEFCE LVMVWRGNGL HVLNERPYRI 
TRGDLFYIRA EDKHSYTSVN DLVLQNIIYC PERLKLNVNW QAMIPGFQGA QWHPHWRLGS 
MGMNQARQVI NQLEHESNGR DPLANEMAEL LFGQLVMTLK RHRYATDDLP ATSRETLLDK 
LITALANSLE SSFALDAFCQ QEQCSERVLR QQFRAQTGMT INQYLRQVRI CHAQYLLQHS 
PLMISEISMQ CGFEDSNYFS VVFTRETGMT PSQWRHLSNQ SD