Gene SeD_A4327 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A4327 
SymbolhemC 
ID6874261 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand
Start bp4173657 
End bp4174598 
Gene Length942 bp 
Protein Length313 aa 
Translation table11 
GC content58% 
IMG OID642787255 
Productporphobilinogen deaminase 
Protein accessionYP_002217871 
Protein GI198243181 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0181] Porphobilinogen deaminase 
TIGRFAM ID[TIGR00212] porphobilinogen deaminase 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones66 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTAGACA ATGTTTTAAG AATTGCCACA CGCCAAAGTC CCCTTGCGCT TTGGCAGGCA 
CATTATGTCA AAGACGCATT GATGGCAACC CATCCGGGAC TGACGGTAGA ACTGGTGCCG
ATGGTCACAC GCGGCGACGT GATTCTCGAT ACTCCCCTGG CGAAAGTGGG CGGTAAGGGA
CTGTTTGTTA AAGAGCTTGA AATCGCGCTG CTGGAAAAAC GCGCTGATAT CGCCGTGCAC
TCTATGAAAG ACGTTCCGGT GGCCTTCCCG GACGGTCTCG GTCTGGTGAC CATTTGCGAG
CGCGAAGATC CGCGCGACGC GTTTGTCTCG AATAAATATC ACAGTCTGGA CGATCTGCCC
GCGGGTAGTA TCGTCGGGAC GTCCAGTTTG CGTCGTCAGT GTCAACTGGC GGAACGCCGT
CCGGACCTCA TTATCCGTTC GTTGCGTGGC AACGTTGGCA CACGTCTCGG CAAGCTGGAC
AACGGCGATT ATGACGCCAT TATCCTGGCC GTGGCCGGTC TGAAACGCTT AGGTCTGGAG
TCGCGCATTC GCACAGCCTT GCCGCCCGAC GTTTCACTTC CTGCCGTAGG CCAGGGCGCC
GTCGGGATTG AGTGTCGTCT TGACGACGCG CGAACACAGG CGCTGCTCGC ACCGTTGAAT
CACTCGCAAA CCGCGCTGCG CGTAACGGCG GAACGCGCTA TGAACACCCG CCTGGAAGGC
GGTTGTCAGG TGCCGATTGG CAGCTATGCA GAAATCATCA ACGGTGAAAT TTGGCTACGC
GCGCTGGTTG GCGCGCCGGA CGGTTCGGTG ATGGTGCGCG GCGAACGTCG TGGTTCTCCC
GAGCAGGCGG AGCAAATGGG CATCTCGCTT GCAGAGGAAC TGCTGGAAAA CGGCGCACGC
GCGATTCTGA CGGAAGTTTA TAACGGCGAG ACGCCCGCAT GA
 
Protein sequence
MLDNVLRIAT RQSPLALWQA HYVKDALMAT HPGLTVELVP MVTRGDVILD TPLAKVGGKG 
LFVKELEIAL LEKRADIAVH SMKDVPVAFP DGLGLVTICE REDPRDAFVS NKYHSLDDLP
AGSIVGTSSL RRQCQLAERR PDLIIRSLRG NVGTRLGKLD NGDYDAIILA VAGLKRLGLE
SRIRTALPPD VSLPAVGQGA VGIECRLDDA RTQALLAPLN HSQTALRVTA ERAMNTRLEG
GCQVPIGSYA EIINGEIWLR ALVGAPDGSV MVRGERRGSP EQAEQMGISL AEELLENGAR
AILTEVYNGE TPA