Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeD_A4248 |
Symbol | |
ID | 6874445 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
Kingdom | Bacteria |
Replicon accession | NC_011205 |
Strand | - |
Start bp | 4094772 |
End bp | 4095590 |
Gene Length | 819 bp |
Protein Length | 272 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 642787178 |
Product | shikimate 5-dehydrogenase |
Protein accession | YP_002217804 |
Protein GI | 198244697 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0169] Shikimate 5-dehydrogenase |
TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 85 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACAAAGC GCATTAATAA AGACACGCAG GTCTGCATGT CCCTGGCGGC ACGCCCAAGT AACTTCGGTA CACGCTTTCA CAACTATCTG TACGAAGCGC TGGATCTCAA TTATCTCTAC AAAGCTTTCT CGCCGACCGA TCTTACGCAG GCCATTAGCG GCGTGCGCGG GCTGGGGATA CGTGGGTGCG CGATCTCTAT GCCGTTTAAA GAAGCCTGCA TTCCGCTGGT GGATGAACTG GATGCTTCTG CTCAGGCCAT TCACTCAGTT AATACCATTG TGAATACCAA TGGCCATCTG AAGGCGTACA ACACCGATTA CATTGCAATA GCTCGCTTGC TGGCGAGTTA CAAGGTCTCT CCCGACCTGG TGTTTGCTTT GCGTGGCAGC GGTGGTATGG CAAAGGCGGT GGCCTGCGCG CTGAAGGATG CGGGGTTTAC CCGTGGTTAT ATTGTCGCGA TTGATGAAGC GTCAGGTAAA CAACTGGCCG AACTCTATGG CTATGAATGG CGCCCGGATA CCGACGGTAT TGAAGCCGAT TTGTTAATTA ACGCCACGCC TATCGGAATG GCTGGCGGTA ATGATGCCGA CAAACTCTCT TATTCCGAAC AGGAAGTGGA TAAGGCGAGC GTTATCTTTG ATGTGGTGGC GCTACCGCCC GTCACGCCGC TGATCCGCTA CGCCCGTGAA CGCGGTAAAA CCGTGATTAC CGGTTCCGAA GTGTTTGCTA TTCAGGCCGT GGAACAATTT GTCCTTTATA CCGGGATTCG CCCGGACGAC GCGCTGTTCC AGAAAGCCGC GGCCTGGTCA CGTCTGTAA
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Protein sequence | MTKRINKDTQ VCMSLAARPS NFGTRFHNYL YEALDLNYLY KAFSPTDLTQ AISGVRGLGI RGCAISMPFK EACIPLVDEL DASAQAIHSV NTIVNTNGHL KAYNTDYIAI ARLLASYKVS PDLVFALRGS GGMAKAVACA LKDAGFTRGY IVAIDEASGK QLAELYGYEW RPDTDGIEAD LLINATPIGM AGGNDADKLS YSEQEVDKAS VIFDVVALPP VTPLIRYARE RGKTVITGSE VFAIQAVEQF VLYTGIRPDD ALFQKAAAWS RL
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