| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A4158 |
|---|
| Symbol | |
|---|
| ID | 6873607 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011205 |
|---|
| Strand | + |
|---|
| Start bp | 4004459 |
|---|
| End bp | 4005406 |
|---|
| Gene Length | 948 bp |
|---|
| Protein Length | 315 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 642787095 |
|---|
| Product | carboxylate/amino acid/amine transporter |
|---|
| Protein accession | YP_002217721 |
|---|
| Protein GI | 198244739 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG5006] Predicted permease, DMT superfamily |
|---|
| TIGRFAM ID | [TIGR00950] Carboxylate/Amino Acid/Amine Transporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.565076 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 61 |
|---|
| Fosmid unclonability p-value | 0.615657 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGCCTG CACGTAAAAA AATAAAACAA CATGACGAGG AAAAAATGGG TTCCACCAGA
AAAGGGATGC TAAACGTCCT GATTGCCGCC GTATTGTGGG GGAGTTCAGG TGTTTGCGCG
CAGTACATCA TGGAGCAAAG CCGTATGTCG TCACAGTTCC TGACGATGAT ACGTTTGTTA
TTCGCCGGGC TGATACTGGT GACCTTCTCC TTTATGCACG GCGATAAGAT ATTTTCGATT
CTTAAAAACC GCAAAGATGC CCTGAGTCTG CTGATTTTCT CCGTGGTGGG CGCGCTCACC
GTTCAGCTAA CCTTCCTGCT TACGATTGAA AAATCCAATG CCGCCACCGC GACAGTGCTG
CAATTTTTAT CGCCGACCAT TATTGTAGCG TGGTTTGCAT TAGCGCGAAG AACACGACCA
GGCATTCTGG TCTTAACCGC CATTCTTACA TCGCTTATCG GCACCTTTTT ACTGGTGACT
CACGGCAATC CAACATCGCT GTCGATCTCT TCAGGCGCGC TGTTCTGGGG TATCGCCTCC
GCATTTGCCG CCGCCTTTTA TACGACCTGG CCTTCCAGGC TAATCGCCCA ATACGGCACG
CTGCCAGTGG TCGGCTGGAG TATGTCCTTT GGCGGCCTTA TTCTGCTGCC CTTCTACGCT
AAAGAAGGAA CGCACTTTGC GGTGAGCGGC AGCCTGATTC TGGCCTTTTT CTACCTTGTG
GTGATCGGTA CGTCGCTGAC GTTCAGCCTG TATTTGAAAG GCGCGCAACT GATTGGTGGC
CCCAAAGCCA GCATTTTAAG CTGCGCGGAA CCGTTAAGCA GCGCCCTGCT GTCGCTACTG
CTGTTGGGGA TTAGTTTTAC CTTGCCGGAC TGGCTGGGCA CGCTGCTCAT TCTCTCGTCA
GTGATTCTGA TCTCCCTCGA TTCCCGTCGA CGCGCGCGGG CCGCTTAA
|
|---|
| Protein sequence | MMPARKKIKQ HDEEKMGSTR KGMLNVLIAA VLWGSSGVCA QYIMEQSRMS SQFLTMIRLL
FAGLILVTFS FMHGDKIFSI LKNRKDALSL LIFSVVGALT VQLTFLLTIE KSNAATATVL
QFLSPTIIVA WFALARRTRP GILVLTAILT SLIGTFLLVT HGNPTSLSIS SGALFWGIAS
AFAAAFYTTW PSRLIAQYGT LPVVGWSMSF GGLILLPFYA KEGTHFAVSG SLILAFFYLV
VIGTSLTFSL YLKGAQLIGG PKASILSCAE PLSSALLSLL LLGISFTLPD WLGTLLILSS
VILISLDSRR RARAA
|
|---|
| |