Gene SeD_A4129 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A4129 
Symbol 
ID6874551 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand
Start bp3973771 
End bp3975882 
Gene Length2112 bp 
Protein Length703 aa 
Translation table11 
GC content53% 
IMG OID642787075 
Productbifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase 
Protein accessionYP_002217702 
Protein GI198242508 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases 
TIGRFAM ID[TIGR00691] (p)ppGpp synthetase, RelA/SpoT family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones72 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGTATCTGT TTGAAAGCCT GAATCAACTG ATTCAAACCT ACCTGCCGGA AGACCAGATT 
AAGCGTCTTC GGCAGGCGTA TCTCGTTGCA CGTGACGCTC ACGAGGGCCA GACACGTTCA
AGCGGTGAAC CCTATATCAC GCACCCGGTA GCGGTGGCCT GTATTCTGGC CGAGATGAAA
CTCGACTACG AAACGCTGAT GGCCGCTCTG CTGCATGACG TGATTGAAGA TACCCCCGCC
ACCTATCAGG ACATGGAACA GCTTTTCGGT AAAAGCGTTG CCGAGCTGGT AGAGGGGGTG
TCGAAACTTG ATAAGCTCAA GTTCCGCGAT AAGAAAGAGG CGCAGGCCGA AAACTTTCGC
AAAATGATTA TGGCGATGGT GCAGGATATC CGCGTCATTC TCATTAAGCT TGCTGACCGT
ACCCATAACA TGCGCACGCT GGGCTCGTTA CGCCCGGATA AACGTCGTCG TATTGCCCGT
GAAACGCTGG AAATCTACAG TCCTCTGGCG CACCGTTTAG GTATTCATCA CATTAAAACC
GAGCTGGAAG AGCTGGGTTT TGAAGCGCTG TATCCCAATC GTTACCGCGT CATTAAAGAA
GTGGTAAAAG CGGCGCGCGG CAACCGTAAA GAGATGATCC AAAAAATCCT CTCTGAAATC
GAAGGACGCT TGCAAGAGGC GGGAATTCCG TGTCGCGTTA GCGGTCGCGA AAAACATCTT
TACTCGATCT ACTGTAAAAT GGTGCTCAAA GAGCAGCGTT TTCACTCGAT CATGGACATT
TACGCGTTTC GCGTGATCGT TCATGACTCC GATACCTGCT ATCGCGTACT CGGCCAGATG
CACAGTCTCT ATAAGCCGCG TCCGGGACGG GTGAAAGACT ATATAGCCAT TCCCAAAGCG
AACGGCTATC AGTCTTTGCA CACCTCGATG ATCGGCCCGC ACGGCGTTCC TGTTGAAGTC
CAGATCCGTA CCGAAGATAT GGATCAGATG GCGGAAATGG GGGTCGCGGC ACACTGGGCG
TATAAAGAAC ACGGTGAGAC CAGCACCACG GCGCAGATCC GCGCCCAGCG CTGGATGCAG
AGCCTGCTGG AGCTACAACA GAGCGCCGGT AGTTCGTTTG AATTTATCGA AAGCGTAAAA
TCCGATCTCT TCCCGGATGA GATTTACGTT TTCACCCCGG AAGGGCGCAT TGTCGAACTG
CCCGCTGGCG CTACGCCGGT GGATTTTGCC TATGCAGTGC ATACCGACAT CGGCCACGCC
TGCGTCGGCG CGCGTGTCGA CCGCCAGCCT TATCCGCTGT CGCAGCCGCT TAGCAGCGGT
CAGACCGTCG AAATTATTAC CGCGCCGGGC GCGCGTCCCA ACGCCGCCTG GCTGAACTTT
GTCGTCAGCT CTAAAGCGCG CGCTAAAATT CGTCAGTTGC TGAAAAACCT CAAACGTGAT
GACTCCGTAA GCCTGGGCCG TCGTCTGCTT AACCATGCTT TAGGCGGCAG TCGTAAGCTG
GCGGAAATTC CGCAGGAAAA TATTCAGCGC GAATTGGATC GTATGAAGCT GGCAACGCTT
GACGATCTGC TGGCGGAAAT CGGTCTCGGC AACGCGATGA GCGTAGTGGT CGCGAAAAAT
CTGCAGCAAG GCGAAGCCGT GGTGCCGACC GTTGCGCAAT CGAATCACGG CCACCTGCCG
ATTAAAGGCG CGGATGGCGT GCTTATCACC TTTGCGAAGT GTTGTCGTCC GATCCCAGGC
GACCCGATCA TCGCTCACGT AAGCCCAGGT AAAGGACTGG TGATCCACCA CGAATCCTGC
CGTAATATCC GTGGATACCA GAAAGAGCCA GAGAAATTTA TGGCGGTCGA ATGGGACAAA
GAGACGGAGC AGGAATTCAT TACCGAAATC AAGGTGGAAA TGTTTAACCA TCAGGGCGCG
CTGGCTAACC TGACGGCGGC GATTAATACC ACCACCTCCA ATATTCAAAG CCTGAATACT
GAAGAGAAAG ATGGTCGCGT CTATAGTACC TTTATTCGCC TTACCGCACG CGATCGCGTA
CATCTGGCGA ATATCATGCG CAAAATCCGC GTGATGCCAG ACGTTATTAA AGTCACCCGT
AACCGAAACT AG
 
Protein sequence
MYLFESLNQL IQTYLPEDQI KRLRQAYLVA RDAHEGQTRS SGEPYITHPV AVACILAEMK 
LDYETLMAAL LHDVIEDTPA TYQDMEQLFG KSVAELVEGV SKLDKLKFRD KKEAQAENFR
KMIMAMVQDI RVILIKLADR THNMRTLGSL RPDKRRRIAR ETLEIYSPLA HRLGIHHIKT
ELEELGFEAL YPNRYRVIKE VVKAARGNRK EMIQKILSEI EGRLQEAGIP CRVSGREKHL
YSIYCKMVLK EQRFHSIMDI YAFRVIVHDS DTCYRVLGQM HSLYKPRPGR VKDYIAIPKA
NGYQSLHTSM IGPHGVPVEV QIRTEDMDQM AEMGVAAHWA YKEHGETSTT AQIRAQRWMQ
SLLELQQSAG SSFEFIESVK SDLFPDEIYV FTPEGRIVEL PAGATPVDFA YAVHTDIGHA
CVGARVDRQP YPLSQPLSSG QTVEIITAPG ARPNAAWLNF VVSSKARAKI RQLLKNLKRD
DSVSLGRRLL NHALGGSRKL AEIPQENIQR ELDRMKLATL DDLLAEIGLG NAMSVVVAKN
LQQGEAVVPT VAQSNHGHLP IKGADGVLIT FAKCCRPIPG DPIIAHVSPG KGLVIHHESC
RNIRGYQKEP EKFMAVEWDK ETEQEFITEI KVEMFNHQGA LANLTAAINT TTSNIQSLNT
EEKDGRVYST FIRLTARDRV HLANIMRKIR VMPDVIKVTR NRN