Gene SeD_A4103 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A4103 
Symbol 
ID6875092 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand- 
Start bp3951464 
End bp3952162 
Gene Length699 bp 
Protein Length232 aa 
Translation table11 
GC content33% 
IMG OID642787050 
Productlipopolysaccharide core biosynthesis protein 
Protein accessionYP_002217677 
Protein GI198246101 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones5 
Plasmid unclonability p-value0.0268948 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones76 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATTATTG AAAAAAAGAT TAAAAACTAT ACCGTCTTTG TCAAAAAAGA CGGTGAAAAA 
TACATTGAGA TATTCAAAGA TTTTCTATCT TATAATCATC AGGTTATTAA AGTCTTCCGT 
AATATAGAAG ATACAAAAGT TGTATTGATT AATACAGACT ACGGAAAATA TATTCTCAAG 
GTATTTAGTC CAAAAGTAAA AAATACTGAA CGATTTTTCA AATCGTTAGT AAAAGGAGAT 
TACTACGAAA AGCTTTTTCA TCAGACAGAT CGTGTTCGGC GAGAAGGGTT TACGGCGCTT 
AATGATTTTT ACCTGCTGGC GGAAATTAAA ACATTACGCT ATGTAAAAAC ATACGTGATG 
ATAATTGAGT ATATTGAAGG TATTGAACTT GTTGATATGC CAGAAATTTC TGACGAGGTG 
AGAGGGAAAA TCAAACAGTC GATATATTCT CTGCATCAGC ATGGTATGGT TTCGGGCGAT 
CCCCATAAAG GTAACTTTAT CCTGCAAGGC AATGAGATCA GAATTATCGA TTTGTCCGGA 
AAAAGACCTT CCAGACAACG AAAAGCAAAG GATCGTATTG ATTTAGAAAG ACATTATGGT 
ATCAAAAATA ATGTGAGAGA TATCGGATTT TACTTATTGA TTTATAAGAA AAAACTTCGA 
AATTTCTTGC GTCGTATTAA GGGTAAGGAA AAGCGCTGA
 
Protein sequence
MIIEKKIKNY TVFVKKDGEK YIEIFKDFLS YNHQVIKVFR NIEDTKVVLI NTDYGKYILK 
VFSPKVKNTE RFFKSLVKGD YYEKLFHQTD RVRREGFTAL NDFYLLAEIK TLRYVKTYVM 
IIEYIEGIEL VDMPEISDEV RGKIKQSIYS LHQHGMVSGD PHKGNFILQG NEIRIIDLSG 
KRPSRQRKAK DRIDLERHYG IKNNVRDIGF YLLIYKKKLR NFLRRIKGKE KR