Gene SeD_A4051 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A4051 
Symbol 
ID6874332 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand- 
Start bp3894857 
End bp3895657 
Gene Length801 bp 
Protein Length266 aa 
Translation table11 
GC content52% 
IMG OID642787000 
ProductHTH-type transcriptional regulator YiaJ 
Protein accessionYP_002217627 
Protein GI198245662 
COG category[K] Transcription 
COG ID[COG1414] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones64 
Fosmid unclonability p-value0.726111 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCCAGA ACAACGATAA AGAGAAGCCT GCGGGGAGTC AGAGCCTGTT TCGTGGCCTG 
ATGTTGATAG AAATTTTGAG TAACTACCCG AACGGTTGCC CACTGGCGCA CCTGTCGGAG 
CTGGCGGGGT TGAACAAGAG TACCGTCCAT CGTTTGTTGC AGGGGCTTCA ATCCTGCGGA 
TACGTGACGC CAGCGCCGGC GGCCGGAAGC TACCGTCTGA CGACAAAGTT TATTGCCGTC 
GGCCAAAAAG CCCTGTCATC GCTGAATATC ATCCACGTTG CGGCACCGCA CCTTGAGGCG 
CTCAACCTGG CCACCGGCGA GACGGTGAAT TTTTCCAGCC GTGAAGATGA CCACGCTATC 
CTGATTTATA AGCTGGAACC GACCACCGGT ATGCTGCGCA CGCGTGCCTA CATTGGCCAG 
CATATGCCGC TGTACTGCTC GGCGATGGGG AAAATTTATA TGGCGTTTGG TCAGCCGGAT 
TATGTGGCGT CTTACTGGGA AAGCCATAAA GATCAGATCC AGCCGCTGAC TCGTAATACC 
ATTACCGATT TACCAGCAAT GTACGATGAG CTGGCGCAAA TTCGTGAAAC CAGCATGGCG 
ATGGATCGCG AAGAAAATGA ACTAGGCGTT TCCTGTATTG CTGTGCCTGT GTTTGATATT 
CACCATCGAG TGCCTTACGC CATTTCTATT TCACTGTCGA CGTCACGGCT AAAACAGATC 
GGCGAGAAAA ATCTGCTCAA ACCGTTGCGT GAAACCGCAC AGGCTATCTC TAATGAGCTG 
GGATTTACCG TTCGCGAATA A
 
Protein sequence
MSQNNDKEKP AGSQSLFRGL MLIEILSNYP NGCPLAHLSE LAGLNKSTVH RLLQGLQSCG 
YVTPAPAAGS YRLTTKFIAV GQKALSSLNI IHVAAPHLEA LNLATGETVN FSSREDDHAI 
LIYKLEPTTG MLRTRAYIGQ HMPLYCSAMG KIYMAFGQPD YVASYWESHK DQIQPLTRNT 
ITDLPAMYDE LAQIRETSMA MDREENELGV SCIAVPVFDI HHRVPYAISI SLSTSRLKQI 
GEKNLLKPLR ETAQAISNEL GFTVRE