| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A4023 |
|---|
| Symbol | |
|---|
| ID | 6872435 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011205 |
|---|
| Strand | - |
|---|
| Start bp | 3867377 |
|---|
| End bp | 3867901 |
|---|
| Gene Length | 525 bp |
|---|
| Protein Length | 174 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 642786973 |
|---|
| Product | long polar fimbria protein A |
|---|
| Protein accession | YP_002217600 |
|---|
| Protein GI | 198242363 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3539] P pilus assembly protein, pilin FimA |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 72 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAGG TTGTTTTTGC TCTGTCTGCT CTCGCTGTAG TTTCCACTTC TGCTTTCGCT
GCTGAATCTG GTGACGGCAC CATTAAATTC ACCGGTGAAA TCGTTGACGC GCCATGCGTC
GTTTCTACTG ACTCTCAGAA CCAGGAAGTT GTGCTGGGTC AGGTTAAGAA AAATATCTTC
AAAGCCATTG GCGACAAGTC TTCTTCTAAG CCTTTCCAGA TCAAACTGGA AGACTGTGAC
ATCACCTCTA ATACCAAAGT TAACGTAAGC TTCAATGGCG TTGGTGATAC AGACGATGCG
ACACTGGTTT CTGTTAACAC TGAAGCAGGT GCGGCAACTG GCGTGGGCAT CGGTATCTAC
GACAACGCTA ACAAGCTTGT TGAAATGAAC ACCGGTAAAT CCACCACTAC GTTGGCTGCT
GGTCAGACCG TGCTGTACTA CACCGCTAAC TACGTTGCAA CAAAAGATAC TGTAACCACT
GGTTACGGTA ACGCAGAAGT GGACTTCAAC CTGTCCTACG AATAA
|
|---|
| Protein sequence | MKKVVFALSA LAVVSTSAFA AESGDGTIKF TGEIVDAPCV VSTDSQNQEV VLGQVKKNIF
KAIGDKSSSK PFQIKLEDCD ITSNTKVNVS FNGVGDTDDA TLVSVNTEAG AATGVGIGIY
DNANKLVEMN TGKSTTTLAA GQTVLYYTAN YVATKDTVTT GYGNAEVDFN LSYE
|
|---|
| |